Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0017404 Sechium edule HOM05D001810 ORTHO05D003876 1.7e-35 152.1 76 100.0
MELO3C026711.2 Cucumis melo HOM05D001810 ORTHO05D003876 1.1e-15 86.3 50 84.0
CsaV3_3G030510 Cucumis sativus L. HOM05D001810 ORTHO05D003876 1.1e-15 86.3 50 84.0
QL03p005885 Quercus lobata HOM05D001810 ORTHO05D003876 2.0e-12 75.5 50 78.0
QL03p006486 Quercus lobata HOM05D001810 ORTHO05D003876 2.0e-12 75.5 50 78.0
Cfa002155 Carpinus fangiana HOM05D001810 ORTHO05D003876 2.6e-12 75.1 50 78.0
Ciclev10033044m.g Citrus clementina HOM05D001810 ORTHO05D003876 2.6e-12 75.1 50 76.0
Haze_16256 Corylus avellana HOM05D001810 ORTHO05D003876 2.6e-12 75.1 50 78.0
CiPaw.01G091100 Carya illinoinensis HOM05D001810 ORTHO05D003876 3.4e-12 74.7 50 76.0
Actinidia21653 Actinidia chinensis HOM05D001810 ORTHO05D003876 1.3e-11 72.8 53 67.9
TAR626G1359 Trochodendron aralioides HOM05D001810 ORTHO05D003876 1.3e-11 72.8 50 70.0
QL05p084549 Quercus lobata HOM05D001810 ORTHO05D003876 1.7e-11 72.4 50 74.0
QL05p084923 Quercus lobata HOM05D001810 ORTHO05D003876 1.7e-11 72.4 50 74.0
CSS0035377 Camellia sinensis var. sinensis HOM05D001810 ORTHO05D003876 2.2e-11 72.0 50 74.0
TWI18G1195 Tripterygium wilfordii HOM05D001810 ORTHO05D005662 2.9e-11 71.6 50 78.0
GSVIVG01029544001 Vitis vinifera HOM05D001810 ORTHO05D003876 3.8e-11 71.2 49 75.5
Manes.14G008100 Manihot esculenta HOM05D001810 ORTHO05D003876 1.4e-10 69.3 49 71.4
vmacro17966 Vaccinium macrocarpon HOM05D001810 ORTHO05D003876 1.4e-10 69.3 62 54.8
Nn8g40872 Nelumbo nucifera HOM05D001810 ORTHO05D003876 3.2e-10 68.2 50 72.0
Rhsim03G0090500 Rhododendron simsii HOM05D001810 ORTHO05D003876 3.2e-10 68.2 62 56.5
Rhsim12G0215300 Rhododendron simsii HOM05D001810 ORTHO05D003876 3.2e-10 68.2 62 56.5
AT1G16810 Arabidopsis thaliana HOM05D001810 ORTHO05D003876 5.4e-10 67.4 50 70.0
CSS0008124 Camellia sinensis var. sinensis HOM05D001810 ORTHO05D003876 5.4e-10 67.4 50 72.0
Oeu038372.1 Olea europaea HOM05D001810 ORTHO05D003876 5.4e-10 67.4 49 69.4
Atru.chr1.2655 Acer truncatum HOM05D001810 ORTHO05D005662 7.1e-10 67.0 49 69.4
Thecc.06G057700 Theobroma cacao HOM05D001810 ORTHO05D003876 7.1e-10 67.0 49 67.3
Hma1.2p1_1111F.1_g258420 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 9.2e-10 66.6 49 71.4
RcHm_v2.0_Chr2g0149551 Rosa chinensis HOM05D001810 ORTHO05D003876 9.2e-10 66.6 50 70.0
AL1G28980 Arabidopsis lyrata HOM05D001810 ORTHO05D003876 1.6e-09 65.9 50 68.0
Prupe.3G022600 Prunus persica HOM05D001810 ORTHO05D003876 2.1e-09 65.5 50 70.0
Actinidia21885 Actinidia chinensis HOM05D001810 ORTHO05D003876 3.5e-09 64.7 50 66.0
Ah.15g094310 Amaranthus hybridus HOM05D001810 ORTHO05D003876 3.5e-09 64.7 40 80.0
FvH4_6g37010 Fragaria vesca HOM05D001810 ORTHO05D003876 3.5e-09 64.7 50 70.0
FAN02G1520 Fragaria x ananassa HOM05D001810 ORTHO05D003876 3.5e-09 64.7 50 70.0
FAN05G3232 Fragaria x ananassa HOM05D001810 ORTHO05D003876 3.5e-09 64.7 50 70.0
FAN09G1684 Fragaria x ananassa HOM05D001810 ORTHO05D003876 3.5e-09 64.7 50 70.0
PGSC0003DMG400004633 Solanum tuberosum HOM05D001810 ORTHO05D003876 3.5e-09 64.7 47 74.5
Sc15g0001110 Simmondsia chinensis HOM05D001810 ORTHO05D003876 4.6e-09 64.3 41 82.9
Migut.I01198 Erythranthe guttata HOM05D001810 ORTHO05D003876 6.0e-09 63.9 46 71.7
unitig_0.g1638 Utricularia gibba HOM05D001810 ORTHO05D003876 6.0e-09 63.9 46 65.2
Duzib235G1221 Durio zibethinus HOM05D001810 ORTHO05D005662 1.0e-08 63.2 36 88.9
Hma1.2p1_0517F.1_g170810 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 1.0e-08 63.2 51 66.7
Lalb_Chr01g0011711 Lupinus albus HOM05D001810 ORTHO05D003876 1.0e-08 63.2 52 69.2
COL.COLO4_31159 Corchorus olitorius HOM05D001810 ORTHO05D003876 1.3e-08 62.8 50 66.0
Hma1.2p1_3612F.1_g337040 Hydrangea macrophylla HOM05D001810 ORTHO05D003876 1.3e-08 62.8 51 66.7
Solyc12g099490.3 Solanum lycopersicum HOM05D001810 ORTHO05D003876 3.0e-08 61.6 47 72.3
Sopen12g034160 Solanum pennellii HOM05D001810 ORTHO05D003876 3.0e-08 61.6 47 72.3
MSTRG.24617 Avicennia marina HOM05D001810 ORTHO05D003876 3.9e-08 61.2 46 67.4
ClCG07G014650 Citrullus lanatus HOM05D001810 ORTHO05D003876 3.9e-08 61.2 65 55.4
Gohir.A05G114700 Gossypium hirsutum HOM05D001810 ORTHO05D003876 5.1e-08 60.8 45 73.3
Gohir.D05G115100 Gossypium hirsutum HOM05D001810 ORTHO05D003876 5.1e-08 60.8 45 73.3
Hund05674 Selenicereus undatus HOM05D001810 ORTHO05D003876 5.1e-08 60.8 40 82.5
Nitab4.5_0000570g0230 Nicotiana tabacum HOM05D001810 ORTHO05D003876 6.6e-08 60.5 42 78.6
Nitab4.5_0003466g0020 Nicotiana tabacum HOM05D001810 ORTHO05D003876 6.6e-08 60.5 42 78.6
DCAR_014051 Daucus carota HOM05D001810 ORTHO05D003876 1.1e-07 59.7 52 63.5
Potri.010G253400 Populus trichocarpa HOM05D001810 ORTHO05D003876 1.1e-07 59.7 52 67.3
Sabra10G0197100 Salix brachista HOM05D001810 ORTHO05D003876 1.1e-07 59.7 52 65.4
MBI18_g21785_MAGBIO Magnolia biondii HOM05D001810 ORTHO05D003876 2.5e-07 58.5 50 62.0
HPP92_015317 Vanilla planifolia HOM05D001810 ORTHO05D003876 2.5e-07 58.5 65 50.8
A09p60740 Brassica napus HOM05D001810 ORTHO05D003876 3.3e-07 58.2 38 73.7
BraA09t41447Z Brassica rapa HOM05D001810 ORTHO05D003876 3.3e-07 58.2 38 73.7
Lsat_1_v5_gn_3_32561 Lactuca sativa HOM05D001810 ORTHO05D003876 3.3e-07 58.2 54 59.3
SEGI_29786 Sequoiadendron giganteum HOM05D001810 ORTHO05D003876 3.3e-07 58.2 37 75.7
EL10Ac7g18157 Beta vulgaris HOM05D001810 ORTHO05D003876 4.3e-07 57.8 46 67.4
CAN.G484.40 Capsicum annuum HOM05D001810 ORTHO05D003876 4.3e-07 57.8 47 70.2
vmacro06801 Vaccinium macrocarpon HOM05D001810 ORTHO05D003876 4.3e-07 57.8 50 66.0
SalBow6G5510 Salvia bowleyana HOM05D001810 ORTHO05D003876 5.6e-07 57.4 46 63.0
PSO170G2381 Papaver somniferum HOM05D001810 ORTHO05D003876 7.3e-07 57.0 51 62.7
Peaxi162Scf00700g00150 Petunia axillaris HOM05D001810 ORTHO05D003876 1.2e-06 56.2 47 68.1
ECA246G3918 Erigeron canadensis HOM05D001810 ORTHO05D003876 2.8e-06 55.1 48 66.7
FAN20G1539 Fragaria x ananassa HOM05D001810 ORTHO05D003876 2.8e-06 55.1 71 50.7
Peaxi162Scf00045g01524 Petunia axillaris HOM05D001810 ORTHO05D003876 2.8e-06 55.1 41 65.9
PSO144G0068 Papaver somniferum HOM05D001810 ORTHO05D003876 3.6e-06 54.7 51 60.8
CARHR017280 Cardamine hirsuta HOM05D001810 ORTHO05D003876 4.7e-06 54.3 50 58.0
FAN14G2000 Fragaria x ananassa HOM05D001810 ORTHO05D003876 4.7e-06 54.3 41 73.2
Zm00001eb229720 Zea mays HOM05D001810 ORTHO05D003876 4.7e-06 54.3 56 55.4
Zm00001eb229740 Zea mays HOM05D001810 ORTHO05D003876 4.7e-06 54.3 55 56.4
ATR0691G256 Amborella trichopoda HOM05D001810 ORTHO05D003876 6.2e-06 53.9 51 60.8
BcaB02g06674 Brassica carinata HOM05D001810 ORTHO05D003876 6.2e-06 53.9 28 92.9
BcaC05g25537 Brassica carinata HOM05D001810 ORTHO05D003876 6.2e-06 53.9 28 92.9
A06p12730 Brassica napus HOM05D001810 ORTHO05D003876 6.2e-06 53.9 28 92.9
C05p15030 Brassica napus HOM05D001810 ORTHO05D003876 6.2e-06 53.9 28 92.9
BolC5t30218H Brassica oleracea HOM05D001810 ORTHO05D003876 6.2e-06 53.9 28 92.9
BraA06t24433Z Brassica rapa HOM05D001810 ORTHO05D003876 6.2e-06 53.9 28 92.9
Carub.0001s1654 Capsella rubella HOM05D001810 ORTHO05D003876 6.2e-06 53.9 50 58.0
Thhalv10009062m.g Eutrema salsugineum HOM05D001810 ORTHO05D003876 6.2e-06 53.9 28 92.9
TPR.G38727 Trifolium pratense HOM05D001810 ORTHO05D003876 6.2e-06 53.9 50 60.0


User provided reference genes

Program Settings