Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 4.9e-117 424.5 213 100.0
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.1e-108 396.7 213 93.0
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 4.2e-108 394.8 213 93.0
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.0e-106 390.2 213 91.5
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 3.3e-105 385.2 213 89.7
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 8.7e-90 334.0 216 76.9
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 9.6e-89 330.5 216 76.4
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 4.8e-88 328.2 216 75.9
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 1.8e-87 326.2 211 74.9
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 2.4e-87 325.9 211 74.9
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 1.2e-86 323.6 215 76.3
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.2e-86 323.6 216 75.5
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 3.4e-86 322.0 216 73.6
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 3.4e-86 322.0 216 73.6
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.0e-85 320.5 215 74.0
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 2.2e-85 319.3 218 71.1
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.8e-85 318.5 216 73.1
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.8e-85 318.5 211 72.0
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.8e-85 318.5 211 72.0
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 6.5e-85 317.8 216 74.1
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 6.5e-85 317.8 218 74.3
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.9e-84 316.2 222 73.9
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 2.5e-84 315.8 216 72.2
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.5e-84 315.8 211 72.0
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 5.5e-84 314.7 216 72.2
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 7.1e-84 314.3 216 71.8
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 9.3e-84 313.9 213 71.8
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.2e-83 313.5 217 71.4
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 1.6e-83 313.2 216 71.3
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 1.6e-83 313.2 214 72.0
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.6e-83 313.2 215 72.1
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.6e-83 313.2 214 72.0
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 2.1e-83 312.8 216 71.8
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 3.5e-83 312.0 213 71.8
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 3.5e-83 312.0 211 71.1
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 4.6e-83 311.6 215 71.2
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 7.9e-83 310.8 217 71.9
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 1.3e-82 310.1 216 70.8
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.3e-82 310.1 222 71.6
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 1.8e-82 309.7 210 70.5
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 8.7e-82 307.4 214 72.4
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 1.1e-81 307.0 213 70.9
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.9e-81 306.2 216 71.3
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.9e-81 306.2 212 71.7
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 2.5e-81 305.8 221 70.1
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 2.5e-81 305.8 222 68.0
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 2.5e-81 305.8 216 73.1
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 3.3e-81 305.4 220 67.7
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 9.6e-81 303.9 220 70.9
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 1.3e-80 303.5 212 70.3
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 2.8e-80 302.4 210 68.6
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 4.8e-80 301.6 220 67.3
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 4.8e-80 301.6 223 66.8
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 8.2e-80 300.8 213 68.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 8.2e-80 300.8 226 69.5
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 1.4e-79 300.1 218 68.3
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.4e-79 300.1 228 69.3
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 1.8e-79 299.7 211 70.6
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 4.1e-79 298.5 228 69.3
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 9.0e-79 297.4 216 69.9
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-78 297.0 215 68.8
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 2.0e-78 296.2 221 66.1
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 2.6e-78 295.8 210 71.9
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.6e-78 295.8 214 69.6
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 2.6e-78 295.8 218 69.3
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 5.8e-78 294.7 216 68.1
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 5.8e-78 294.7 213 70.0
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.0e-77 293.9 223 64.6
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 1.0e-77 293.9 218 67.0
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.7e-77 293.1 216 68.5
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 2.2e-77 292.7 216 70.8
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 2.2e-77 292.7 218 66.1
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 2.2e-77 292.7 218 68.8
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 2.9e-77 292.4 198 72.7
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 2.9e-77 292.4 221 65.6
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 5.0e-77 291.6 224 65.6
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 6.5e-77 291.2 224 64.7
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 6.5e-77 291.2 224 64.7
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 1.1e-76 290.4 224 65.2
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 1.1e-76 290.4 205 66.8
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 2.5e-76 289.3 222 66.2
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 3.2e-76 288.9 199 73.4
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 5.5e-76 288.1 224 64.3
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 5.5e-76 288.1 214 68.2
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 7.2e-76 287.7 224 64.3
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 7.2e-76 287.7 224 64.3
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 1.6e-75 286.6 208 66.3
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 6.1e-75 284.6 209 68.9
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 1.0e-74 283.9 196 71.4
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 3.9e-74 282.0 214 64.0
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 5.7e-73 278.1 203 65.0
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 1.3e-72 276.9 214 63.1
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 2.8e-72 275.8 223 63.7
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.8e-72 275.8 202 69.3
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 3.7e-72 275.4 221 63.3
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.7e-72 275.4 177 74.0
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 4.8e-72 275.0 219 68.9
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 1.4e-71 273.5 223 63.2
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.4e-71 273.5 202 69.8
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 6.9e-71 271.2 215 65.6
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 2.0e-70 269.6 215 64.7
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.6e-70 269.2 184 71.7
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.0e-69 267.3 189 67.7
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 1.3e-69 266.9 188 67.0
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.9e-69 265.8 215 62.8
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 2.9e-69 265.8 214 62.6
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 3.8e-69 265.4 215 62.3
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.4e-68 263.5 204 63.7
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 4.2e-68 261.9 216 62.5
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 7.2e-68 261.2 193 63.7
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 9.4e-68 260.8 246 57.3
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.6e-67 258.8 256 55.5
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 3.6e-67 258.8 256 55.5
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 1.0e-66 257.3 184 66.8
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 8.8e-66 254.2 178 69.1
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 2.5e-65 252.7 215 59.1
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 3.3e-65 252.3 188 63.8
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 9.1e-63 244.2 214 55.6
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 2.6e-62 242.7 217 59.9
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 1.0e-61 240.7 172 67.4
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 6.5e-61 238.0 175 66.3
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 3.6e-59 232.3 146 74.7
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.1e-55 220.7 145 71.0
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 2.9e-53 212.6 204 55.9
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 5.5e-52 208.4 143 69.9
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 5.2e-50 201.8 158 61.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 7.5e-49 198.0 135 74.1
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 8.2e-48 194.5 198 46.5
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 1.4e-47 193.7 150 67.3
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 2.4e-47 193.0 142 63.4
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 9.4e-44 181.0 221 43.0
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 8.0e-43 177.9 163 50.9
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.0e-42 177.6 121 71.1
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 7.5e-41 171.4 143 61.5
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 1.7e-40 170.2 143 54.5
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.6e-38 163.7 125 62.4
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 2.0e-38 163.3 107 72.0
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.5e-36 157.1 208 39.4
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 7.2e-36 154.8 143 47.6
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 4.0e-34 149.1 162 44.4
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 4.9e-32 142.1 205 37.6
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 4.5e-30 135.6 141 41.8
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 3.8e-29 132.5 216 41.7
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.6e-27 125.9 184 34.8
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 5.7e-25 118.6 77 67.5
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 4.9e-24 115.5 75 68.0
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 1.1e-20 104.4 152 38.2
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 9.5e-20 101.3 76 60.5
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 2.1e-19 100.1 89 62.9
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 4.1e-15 85.9 49 73.5
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 7.0e-15 85.1 49 75.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 2.7e-14 83.2 48 72.9
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 6.0e-14 82.0 70 55.7
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 6.0e-14 82.0 84 56.0
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.3e-13 80.9 55 65.5
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 1.7e-13 80.5 77 58.4
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 5.0e-13 79.0 49 71.4
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 7.5e-09 65.1 42 71.4
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.9e-07 60.5 51 58.8
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 1.2e-06 57.8 47 57.4
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 2.7e-06 56.6 85 28.2
Os07g0124600 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D000241 7.8e-06 55.1 62 40.3
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 7.8e-06 55.1 34 70.6


User provided reference genes

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