Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 0.0e+00 1401.0 711 100.0
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 0.0e+00 1098.2 713 78.3
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 4.4e-311 1070.8 713 77.1
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 5.1e-243 844.7 559 77.5
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 5.6e-226 788.1 650 62.0
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 1.3e-219 766.9 658 61.6
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 4.8e-217 758.4 691 58.3
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 2.4e-216 756.1 660 59.5
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 4.9e-214 748.4 664 58.3
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 6.5e-214 748.0 648 58.0
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 1.1e-213 747.3 682 57.2
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 5.5e-213 745.0 648 57.9
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 2.7e-212 742.7 692 57.1
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 6.0e-212 741.5 648 57.9
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.9e-210 736.5 648 57.6
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 2.5e-210 736.1 667 56.7
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 2.6e-207 726.1 681 55.9
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 2.6e-207 726.1 709 57.5
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 7.6e-207 724.5 666 57.5
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 1.1e-205 720.7 663 56.1
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 4.2e-205 718.8 663 56.4
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 1.8e-203 713.4 660 56.5
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 5.1e-203 711.8 647 57.7
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 2.5e-202 709.5 680 56.5
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 2.4e-200 703.0 664 56.0
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 2.4e-200 703.0 656 56.2
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 6.9e-200 701.4 700 53.7
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 1.5e-199 700.3 664 55.9
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 7.7e-199 698.0 665 55.2
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 2.2e-198 696.4 672 55.5
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 2.7e-196 689.5 616 58.9
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 8.8e-195 684.5 647 56.1
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 8.8e-195 684.5 690 54.2
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 9.7e-194 681.0 686 53.8
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 5.3e-192 675.2 634 54.4
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 5.3e-192 675.2 645 57.7
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 9.1e-192 674.5 654 54.7
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 5.9e-191 671.8 666 54.2
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 2.3e-187 659.8 653 54.4
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 8.8e-187 657.9 744 50.0
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 7.4e-186 654.8 614 57.8
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 1.3e-185 654.1 623 55.1
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.7e-185 653.7 658 54.0
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 2.8e-185 652.9 683 51.0
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 5.3e-184 648.7 648 53.7
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 9.1e-184 647.9 685 52.3
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 1.2e-183 647.5 687 52.4
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 1.3e-182 644.0 645 52.4
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 2.2e-182 643.3 643 54.9
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 3.6e-180 636.0 645 51.6
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 4.7e-180 635.6 648 52.3
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 6.1e-180 635.2 614 54.4
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 1.0e-179 634.4 655 52.4
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 3.0e-179 632.9 646 52.2
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 3.0e-179 632.9 646 52.2
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 5.2e-179 632.1 660 51.2
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 6.7e-179 631.7 643 52.6
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 7.5e-178 628.2 647 51.6
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 7.5e-178 628.2 647 51.8
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 9.7e-178 627.9 688 51.0
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 3.7e-177 625.9 640 52.8
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 6.3e-177 625.2 666 50.8
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 8.2e-177 624.8 647 51.6
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 1.2e-175 620.9 707 48.7
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 5.9e-175 618.6 633 52.1
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 7.7e-175 618.2 625 54.6
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 3.8e-174 615.9 658 50.8
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 2.5e-173 613.2 669 50.1
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 1.4e-171 607.4 562 56.4
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 4.1e-168 595.9 644 50.6
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 1.1e-165 587.8 642 50.2
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 7.2e-165 585.1 672 48.8
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 5.2e-163 578.9 679 49.3
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 7.5e-162 575.1 661 48.1
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 1.4e-160 570.9 669 47.1
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 2.0e-159 567.0 451 64.3
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 1.0e-158 564.7 456 62.9
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 4.3e-157 559.3 668 47.3
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 7.0e-152 542.0 661 46.3
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 4.3e-149 532.7 526 54.4
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 1.6e-148 530.8 694 44.8
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 1.6e-143 514.2 504 55.0
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 1.6e-143 514.2 665 44.2
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 2.1e-140 503.8 680 45.6
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 3.4e-138 496.5 617 48.1
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 5.6e-133 479.2 600 47.2
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 1.2e-127 461.5 600 46.2
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 1.6e-127 461.1 525 48.8
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 1.6e-127 461.1 349 65.9
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 1.9e-125 454.1 310 70.6
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 4.6e-119 433.0 493 49.1
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 1.0e-118 431.8 382 58.4
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 2.9e-113 413.7 302 66.6
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 2.3e-102 377.5 644 37.7
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 5.5e-96 356.3 306 59.5
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 7.4e-93 345.9 338 53.8
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 2.8e-92 344.0 651 35.2
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 2.0e-90 337.8 401 48.9
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 3.4e-90 337.0 686 33.4
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 3.2e-88 330.5 281 57.7
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 4.5e-74 283.5 374 43.0
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 4.5e-74 283.5 372 44.1
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 1.4e-72 278.5 324 47.8
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 1.4e-70 271.9 603 33.2
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 3.7e-68 263.8 659 31.9
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 6.1e-63 246.5 557 31.8
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 5.3e-59 233.4 308 46.8
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 6.3e-52 209.9 382 39.0
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 2.3e-46 191.4 145 60.7
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 4.1e-43 180.6 154 60.4
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 3.0e-38 164.5 329 36.2
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 1.7e-36 158.7 216 42.6
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 9.2e-35 152.9 129 56.6
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 1.3e-33 149.1 171 46.8
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-32 145.6 244 38.9
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.0e-30 139.4 252 37.3
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 1.1e-24 119.4 144 41.0
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 1.6e-23 115.5 188 41.5
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 1.4e-22 112.5 161 41.0
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 2.1e-18 98.6 155 40.0
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 1.2e-15 89.4 77 59.7
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 6.2e-15 87.0 80 53.8
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 9.9e-13 79.7 213 31.5
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 1.3e-12 79.3 54 68.5
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 1.1e-11 76.3 152 34.2
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 7.1e-11 73.6 114 38.6
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 1.0e-09 69.7 284 22.9
Mapoly0061s0136 Marchantia polymorpha HOM05D028917 ORTHO05D023487 6.6e-09 67.0 237 24.5
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 5.6e-08 63.9 220 25.0
Medtr6g087540 Medicago truncatula HOM05D006226 ORTHO05D007738 1.2e-07 62.8 139 34.5
AagrBONN_evm.TU.Sc2ySwM_362.2567 Anthoceros agrestis HOM05D028917 ORTHO05D023487 1.6e-07 62.4 153 30.1
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 2.8e-07 61.6 95 36.8


User provided reference genes

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