Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 0.0e+00 2098.2 1572 100.0
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 0.0e+00 1332.0 1581 72.4
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 0.0e+00 1285.4 1584 67.4
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 0.0e+00 1233.8 1668 64.1
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 2.9e-251 873.2 1477 59.9
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.9e-194 684.5 1567 44.6
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.1e-193 681.0 1595 41.9
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 9.0e-192 675.6 1548 46.9
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.7e-187 659.4 1576 38.7
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.5e-186 658.3 1629 40.0
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 9.3e-181 639.0 1577 41.8
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 6.9e-168 596.3 1568 41.1
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 3.4e-167 594.0 1626 40.8
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 7.7e-167 592.8 1502 43.9
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.2e-164 585.5 1588 43.5
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.1e-164 583.2 1048 40.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.3e-163 581.3 1629 41.5
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 8.8e-163 579.3 1583 39.9
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 1.5e-162 578.6 1581 39.9
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.0e-155 555.8 1538 38.9
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 2.3e-155 554.7 1577 38.4
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.5e-154 552.0 1568 43.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.0e-154 551.6 1577 38.3
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 9.7e-154 549.3 1582 38.6
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 4.8e-153 547.0 1619 39.8
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 5.9e-151 540.0 1577 39.1
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.9e-150 537.7 1583 40.9
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.1e-148 530.0 1577 39.4
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.8e-147 528.5 1582 37.0
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.4e-144 518.1 1577 39.8
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.6e-143 515.4 1567 38.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 4.5e-143 513.8 1576 42.0
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 1.5e-141 508.8 1567 39.1
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 5.5e-141 506.9 1550 38.3
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.6e-140 504.2 1575 37.0
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 2.8e-137 494.6 1638 38.3
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.6e-135 488.8 1535 39.9
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 5.0e-134 483.8 1778 36.4
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 6.6e-134 483.4 1568 39.0
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 2.1e-132 478.4 1567 38.9
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 3.6e-132 477.6 1567 36.1
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.9e-129 467.2 1583 35.9
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 1.8e-128 465.3 1565 38.7
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 9.2e-128 463.0 1547 38.1
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 5.9e-127 460.3 1556 36.1
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.0e-126 459.5 1576 36.7
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.0e-126 457.2 1576 37.4
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.1e-125 456.1 1577 38.6
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 5.2e-123 447.2 1584 36.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.2e-121 441.8 1603 37.0
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.4e-120 438.3 1576 39.6
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.0e-119 435.3 1037 40.0
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 5.6e-117 427.2 1573 35.5
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 2.1e-116 425.2 1032 44.9
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 2.8e-116 424.9 1576 36.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.3e-115 421.8 1589 36.1
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 6.8e-115 420.2 1558 41.0
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.5e-114 419.1 1568 36.2
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.6e-114 418.3 1576 38.2
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.9e-113 414.8 1567 37.4
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 3.7e-113 414.5 1519 38.1
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 3.7e-113 414.5 1576 37.6
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 4.1e-112 411.0 1567 36.2
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 7.1e-112 410.2 1561 35.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 3.0e-110 404.8 1577 38.0
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 6.6e-110 403.7 1777 33.8
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 8.9e-107 393.3 1575 38.2
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 2.0e-106 392.1 1568 41.7
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 5.8e-106 390.6 1584 34.5
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.9e-105 388.3 658 52.7
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.1e-104 384.4 1065 39.1
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.1e-104 383.6 1575 37.3
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 7.1e-104 383.6 1575 38.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 8.1e-100 370.2 1252 30.0
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 4.0e-99 367.9 971 38.7
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-98 366.3 1589 35.1
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-98 366.3 1589 35.1
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 9.9e-98 363.2 980 41.9
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 6.4e-97 360.5 1141 42.8
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.1e-96 359.8 1575 36.3
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.8e-92 345.1 1567 36.1
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 5.3e-91 340.9 511 52.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 4.9e-89 334.3 1558 36.4
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 9.3e-88 330.1 1354 29.5
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.0e-86 326.6 1566 33.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.4e-83 316.2 1591 38.5
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 1.7e-81 309.3 769 53.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.0e-78 298.5 1339 37.1
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 3.3e-77 295.0 1568 33.1
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 8.7e-70 270.4 1050 41.3
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.0e-62 245.4 370 45.7
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 2.0e-58 232.6 1078 39.0
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.9e-54 218.4 314 46.2
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.4e-51 209.9 1555 29.0
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.5e-48 199.1 1582 30.7
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.2e-47 196.8 277 45.8
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 6.7e-46 191.0 1170 27.9
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 4.4e-45 188.3 687 37.6
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 7.4e-45 187.6 411 33.8
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 7.7e-42 177.6 401 36.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.2e-41 176.0 216 50.9
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 5.0e-41 174.9 395 50.1
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 8.5e-41 174.1 689 37.3
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.2e-40 171.8 447 35.6
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 5.5e-40 171.4 259 43.6
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.2e-39 170.2 362 38.1
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 7.5e-37 161.0 345 45.8
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 2.2e-36 159.5 680 36.8
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 2.2e-36 159.5 341 38.1
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 8.2e-36 157.5 282 40.8
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-35 157.1 225 49.3
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 1.7e-33 149.8 298 38.3
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.8e-33 148.7 994 38.9
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 2.5e-32 146.0 372 35.8
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 3.2e-32 145.6 243 44.4
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 5.5e-32 144.8 305 47.5
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 2.1e-31 142.9 360 44.4
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.7e-31 142.5 814 28.6
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.6e-31 142.1 344 44.5
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.5e-29 136.7 333 35.7
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 2.8e-28 132.5 240 52.5
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 8.3e-28 131.0 677 25.0
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.8e-27 129.8 745 26.8
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 4.1e-27 128.6 240 52.9
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 9.1e-27 127.5 1575 35.4
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.3e-25 123.6 1429 28.4
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 1.1e-24 120.6 372 33.1
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 3.2e-24 119.0 355 42.3
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 3.2e-24 119.0 355 42.3
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 4.2e-24 118.6 164 48.2
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.5e-24 118.2 1397 28.2
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 7.2e-24 117.9 363 41.3
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 3.6e-23 115.5 363 30.6
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.0e-22 114.0 1566 28.6
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.4e-22 113.6 355 43.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 1.8e-22 113.2 321 34.0
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 8.8e-22 110.9 341 32.8
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.2e-21 110.5 924 30.3
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.5e-21 110.2 1569 33.8
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 8.3e-20 104.4 203 39.9
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.4e-19 103.6 158 53.8
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.4e-19 102.8 658 32.5
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 7.0e-19 101.3 109 50.5
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 7.0e-19 101.3 109 50.5
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.3e-17 96.3 443 27.3
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.3e-16 92.4 658 31.9
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 1.2e-15 90.5 1108 32.1
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.0e-15 87.8 864 29.1
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 1.0e-14 87.4 1573 21.4
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.0e-14 87.4 344 31.1
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 4.4e-13 82.0 108 45.4
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 1.3e-12 80.5 363 37.2
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-12 80.1 200 33.0
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.7e-12 80.1 200 33.0
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.1e-11 77.4 308 29.2
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 2.4e-11 76.3 328 29.3
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 9.2e-11 74.3 338 28.7
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 4.6e-10 72.0 123 43.9
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 5.9e-10 71.6 286 29.7
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 7.8e-10 71.2 319 27.6
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-09 70.9 141 36.2
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.0e-09 70.9 141 36.2
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.7e-09 70.1 186 31.7
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.1e-08 67.4 323 32.2
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 8.0e-07 61.2 619 31.0
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 3.1e-06 59.3 56 57.1
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 5.2e-06 58.5 97 45.4
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 5.2e-06 58.5 77 40.3
Lj6A772G33 Lonicera japonica HOM05D002721 ORTHO05D002919 6.8e-06 58.2 198 25.3


User provided reference genes

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