Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.0e-67 260.0 135 100.0
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 6.8e-56 220.7 136 84.6
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 1.3e-51 206.5 134 79.1
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 3.0e-51 205.3 136 79.4
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 6.6e-51 204.1 133 80.5
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.5e-50 202.2 136 78.7
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 4.3e-50 201.4 134 78.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 5.6e-50 201.1 136 78.7
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.6e-50 201.1 136 78.7
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 5.6e-50 201.1 138 77.5
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 5.6e-50 201.1 134 77.6
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 9.5e-50 200.3 134 76.9
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.1e-49 199.1 136 77.9
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.8e-49 198.7 136 77.2
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 8.1e-49 197.2 135 76.3
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.1e-48 196.8 136 78.7
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-48 196.8 135 77.0
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.4e-48 196.4 134 76.1
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 1.8e-48 196.1 138 79.7
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.3e-48 195.7 136 77.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 2.3e-48 195.7 136 77.9
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.1e-48 195.3 133 77.4
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 3.1e-48 195.3 133 77.4
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 4.0e-48 194.9 136 80.9
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 6.8e-48 194.1 134 76.1
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 6.8e-48 194.1 134 75.4
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.9e-48 193.7 136 75.0
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 8.9e-48 193.7 133 76.7
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.2e-47 193.4 136 76.5
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 1.2e-47 193.4 135 77.8
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 1.2e-47 193.4 134 76.9
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.0e-47 192.6 134 76.1
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 2.0e-47 192.6 138 75.4
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 2.0e-47 192.6 136 75.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 3.4e-47 191.8 134 75.4
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 3.4e-47 191.8 133 74.4
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 3.4e-47 191.8 133 74.4
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 4.4e-47 191.4 134 75.4
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 5.8e-47 191.0 135 74.1
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 5.8e-47 191.0 138 73.9
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.8e-47 191.0 134 76.1
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 5.8e-47 191.0 133 73.7
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 7.5e-47 190.7 133 76.7
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 7.5e-47 190.7 136 76.5
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 9.8e-47 190.3 135 75.6
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.3e-46 189.9 136 74.3
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.7e-46 189.5 133 74.4
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.2e-46 189.1 136 75.0
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.2e-46 189.1 136 75.7
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.2e-46 189.1 134 75.4
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.9e-46 188.7 133 72.9
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 3.7e-46 188.3 133 75.2
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 4.9e-46 188.0 137 75.2
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.4e-46 187.6 135 75.6
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 8.3e-46 187.2 139 72.7
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 8.3e-46 187.2 139 72.7
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 8.3e-46 187.2 136 72.8
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 8.3e-46 187.2 135 72.6
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.3e-46 187.2 139 72.7
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 1.1e-45 186.8 135 74.1
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.1e-45 186.8 135 74.1
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.9e-45 186.0 138 72.5
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 2.4e-45 185.7 135 74.1
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 3.2e-45 185.3 138 75.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 4.1e-45 184.9 137 71.5
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 4.1e-45 184.9 134 73.9
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 4.1e-45 184.9 134 75.4
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 5.4e-45 184.5 138 72.5
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 5.4e-45 184.5 139 71.9
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 5.4e-45 184.5 136 74.3
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 7.1e-45 184.1 136 75.0
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 9.2e-45 183.7 138 71.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.2e-44 183.3 138 71.0
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 1.2e-44 183.3 134 75.4
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 2.1e-44 182.6 136 70.6
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 2.1e-44 182.6 136 70.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-44 182.2 138 70.3
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-44 182.2 138 70.3
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-44 182.2 138 70.3
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 3.5e-44 181.8 135 74.8
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.5e-44 181.8 133 72.2
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 4.6e-44 181.4 133 72.2
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 6.0e-44 181.0 136 71.3
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 7.8e-44 180.6 133 71.4
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.0e-43 180.3 136 70.6
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 1.3e-43 179.9 139 71.9
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 1.3e-43 179.9 136 72.8
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.3e-43 179.9 139 70.5
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.3e-43 179.9 139 70.5
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 1.3e-43 179.9 134 73.9
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.7e-43 179.5 136 73.5
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.7e-43 179.5 136 73.5
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 2.3e-43 179.1 135 73.3
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 2.3e-43 179.1 134 70.9
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 3.0e-43 178.7 134 71.6
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 3.9e-43 178.3 139 69.8
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 3.9e-43 178.3 139 69.8
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 6.6e-43 177.6 139 70.5
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.6e-43 177.6 128 71.9
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 8.6e-43 177.2 135 69.6
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 8.6e-43 177.2 136 69.1
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 8.6e-43 177.2 136 69.1
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 8.6e-43 177.2 136 72.1
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.5e-42 176.4 135 68.9
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-42 176.4 134 70.1
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.5e-42 176.4 134 70.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 1.9e-42 176.0 138 70.3
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 1.9e-42 176.0 138 70.3
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 1.9e-42 176.0 138 70.3
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 1.9e-42 176.0 138 70.3
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 1.9e-42 176.0 138 70.3
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.9e-42 176.0 135 69.6
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.5e-42 175.6 132 70.5
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 3.3e-42 175.3 135 70.4
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.3e-42 174.9 150 67.3
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 5.6e-42 174.5 134 71.6
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 7.3e-42 174.1 137 67.9
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.3e-42 174.1 137 70.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 9.5e-42 173.7 138 70.3
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.2e-41 173.3 135 71.1
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 1.2e-41 173.3 139 68.3
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.6e-41 172.9 141 68.1
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.6e-41 172.9 135 69.6
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.1e-41 172.6 139 67.6
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 2.1e-41 172.6 133 69.9
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 3.6e-41 171.8 137 69.3
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 6.2e-41 171.0 128 70.3
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 4.0e-40 168.3 140 68.6
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 6.8e-40 167.5 135 66.7
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.5e-39 166.4 135 65.9
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 2.0e-39 166.0 135 66.7
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 1.3e-38 163.3 131 67.9
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 4.9e-38 161.4 133 68.4
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.2e-36 156.8 139 65.5
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 6.6e-35 151.0 89 83.1
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.1e-34 150.2 115 71.3
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 5.6e-34 147.9 105 72.4
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.6e-33 146.4 148 60.1
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 6.2e-33 144.4 122 65.6
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.2e-33 144.4 136 60.3
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.4e-32 143.3 137 61.3
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.4e-32 142.5 131 55.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 5.2e-32 141.4 136 59.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.6e-31 139.0 156 57.1
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 2.9e-30 135.6 122 58.2
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.8e-30 135.2 135 60.7
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 6.4e-30 134.4 133 54.9
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.2e-29 131.7 115 60.9
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 5.4e-29 131.3 115 60.9
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.6e-28 129.8 126 60.3
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.5e-28 128.6 109 64.2
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 6.0e-28 127.9 132 56.8
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 3.0e-27 125.6 136 58.1
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.0e-27 125.6 133 55.6
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.5e-26 123.2 136 54.4
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 1.3e-25 120.2 83 72.3
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 4.5e-23 111.7 85 71.8
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 2.4e-21 105.9 66 75.8
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 5.4e-21 104.8 138 47.1
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.3e-19 100.1 88 65.9
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 2.3e-19 99.4 53 86.8
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.0e-15 86.3 135 44.4
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.6e-15 85.9 50 82.0
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.3e-14 83.6 76 63.2
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.0e-11 73.9 79 55.7
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.0e-06 57.4 32 93.8
PSO541G1472 Papaver somniferum HOM05D004382 ORTHO05D005181 6.5e-06 54.7 33 69.7


User provided reference genes

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