Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 2069.3 977 100.0
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1823.9 975 87.8
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1803.9 975 87.0
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1798.9 976 86.7
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1641.3 978 77.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1624.0 977 77.5
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1614.0 977 76.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1610.5 976 76.3
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1610.5 972 76.4
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1609.3 972 76.6
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1609.0 972 76.0
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1608.6 989 76.3
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1606.7 975 76.3
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1604.3 972 76.1
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1603.6 977 76.4
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1599.7 970 76.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1598.6 977 75.1
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1598.2 961 77.5
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1590.9 977 75.3
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1590.1 978 76.1
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1585.9 979 76.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1581.6 981 74.9
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1580.5 968 75.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1575.8 977 74.8
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1574.3 982 75.6
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1567.4 979 74.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1565.1 978 73.3
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 975 74.3
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1560.4 971 74.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1560.4 977 73.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1559.7 963 75.4
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1558.5 982 73.7
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1556.2 971 73.9
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 987 73.6
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1553.9 974 74.1
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 963 74.8
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1549.3 977 74.4
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1548.5 977 73.8
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1546.9 979 73.3
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1545.8 978 73.4
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1544.3 979 74.0
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1543.9 970 73.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1543.1 982 73.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1543.1 964 74.2
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1542.7 963 74.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 972 74.2
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1541.2 973 73.2
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1540.4 963 74.6
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 976 73.9
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1535.0 963 74.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1534.6 975 72.9
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1533.1 969 74.1
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1531.9 970 72.6
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 969 73.2
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1528.1 980 71.8
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1527.7 972 73.1
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1526.1 975 72.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1525.8 977 72.7
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1525.4 968 73.3
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1518.8 972 73.3
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 975 72.5
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1518.4 989 72.6
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1513.8 971 72.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1511.1 989 71.1
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1511.1 969 72.0
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1509.6 976 71.8
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1509.2 984 71.2
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1508.8 969 72.5
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 970 72.1
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1505.7 963 72.5
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1503.0 984 71.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 975 71.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1501.1 964 72.3
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1500.3 977 71.4
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1499.6 975 71.8
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1499.2 972 72.3
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1498.4 976 70.2
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 966 72.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1495.3 984 70.8
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1494.9 980 70.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1494.2 982 71.8
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1492.6 977 71.6
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1492.2 971 71.4
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1491.5 978 72.1
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1491.1 978 71.3
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1489.9 927 74.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1488.0 976 71.2
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 973 70.5
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1470.7 971 70.2
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 941 71.9
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1461.8 967 70.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1457.6 968 70.7
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 983 69.9
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1453.3 962 71.1
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1449.5 986 69.6
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1446.8 981 69.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1444.1 982 69.6
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1442.9 983 70.0
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1442.9 983 70.0
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1440.2 879 74.4
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1438.7 981 69.2
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 982 69.7
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 981 68.7
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1431.0 981 68.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 978 69.2
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1429.5 978 69.3
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1425.2 980 68.9
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1424.8 1008 68.1
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 980 68.9
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1417.9 871 74.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1413.3 981 68.8
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1410.6 968 67.0
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1409.4 982 68.5
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1398.6 844 76.2
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1384.4 983 65.4
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1377.5 845 74.8
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1372.1 1003 64.0
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1352.8 977 66.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1338.9 982 64.3
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1335.1 768 78.4
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1326.6 984 66.5
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1304.3 984 65.3
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1244.2 763 75.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1241.9 854 68.1
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1212.2 781 72.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1200.7 789 71.5
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1188.3 802 69.6
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1080.1 981 54.2
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 9.9e-306 1053.5 687 72.1
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.2e-300 1036.6 965 53.7
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 5.6e-285 984.6 966 52.4
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.0e-282 976.1 699 67.0
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.2e-272 942.2 983 48.9
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 3.3e-269 932.2 976 49.8
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.6e-242 842.8 564 69.7
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.4e-238 830.5 874 49.5
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.3e-206 723.4 403 80.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 2.4e-134 484.2 284 78.9
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 6.5e-116 422.9 343 60.3
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 5.5e-115 419.9 412 54.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 3.4e-104 384.0 366 55.2
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 3.8e-100 370.5 217 79.3
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.2e-90 339.0 193 80.3
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-87 328.9 202 72.3
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 4.6e-85 320.5 275 58.5
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.0e-76 292.7 159 81.1
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.1e-70 272.7 215 60.9
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.5e-67 262.3 143 81.1
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.2e-65 253.8 156 71.2
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 6.9e-65 253.4 753 28.2
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 2.5e-51 208.4 419 36.0
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 2.1e-42 178.7 96 80.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.6e-40 171.8 786 23.8
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 2.2e-39 168.7 150 56.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 8.4e-39 166.8 164 50.6
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 7.4e-35 153.7 148 52.7
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.1e-33 149.8 94 78.7
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 4.1e-33 147.9 93 69.9
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.6e-32 145.2 143 51.0
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 8.8e-28 130.2 88 70.5
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 5.7e-27 127.5 118 52.5
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-23 115.9 183 38.8
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 4.2e-22 111.3 184 35.9
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 2.3e-20 105.5 119 47.9
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 6.7e-20 104.0 308 27.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 7.0e-17 94.0 121 45.5
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.5e-16 92.8 114 46.5
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.4e-12 79.7 71 50.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 6.7e-12 77.4 46 67.4
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 4.1e-09 68.2 49 71.4
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 4.1e-09 68.2 76 47.4
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.2e-07 62.4 47 55.3
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 6.5e-07 60.8 45 64.4


User provided reference genes

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