Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016383 Sechium edule HOM05D000902 ORTHO05D373078 1.3e-35 152.5 75 100.0
Sed0004259 Sechium edule HOM05D000902 ORTHO05D372863 4.4e-20 100.9 46 97.8
Sed0012964 Sechium edule HOM05D000902 ORTHO05D000832 3.0e-13 78.2 40 85.0
MELO3C032854.2 Cucumis melo HOM05D000902 ORTHO05D000832 8.8e-13 76.6 40 85.0
Sed0006789 Sechium edule HOM05D000902 ORTHO05D000832 3.4e-12 74.7 40 82.5
CsaV3_4G002220 Cucumis sativus L. HOM05D000902 ORTHO05D000832 1.3e-11 72.8 40 82.5
Duzib251G0606 Durio zibethinus HOM05D000902 ORTHO05D000832 5.9e-09 63.9 40 72.5
Cfa018751 Carpinus fangiana HOM05D000902 ORTHO05D000832 7.7e-09 63.5 40 75.0
Ciclev10033760m.g Citrus clementina HOM05D000902 ORTHO05D000832 7.7e-09 63.5 40 70.0
QL03p051148 Quercus lobata HOM05D000902 ORTHO05D000832 1.3e-08 62.8 40 70.0
CSS0044547 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 1.7e-08 62.4 40 70.0
Gohir.A12G140950 Gossypium hirsutum HOM05D000902 ORTHO05D000832 1.7e-08 62.4 40 70.0
TAR629G3413 Trochodendron aralioides HOM05D000902 ORTHO05D000832 2.9e-08 61.6 40 67.5
Actinidia08045 Actinidia chinensis HOM05D000902 ORTHO05D000832 3.8e-08 61.2 42 69.0
Aqoxy5G03251 Aquilegia oxysepala HOM05D000902 ORTHO05D000832 5.0e-08 60.8 42 69.0
Gorai.008G157100 Gossypium raimondii HOM05D000902 ORTHO05D000832 5.0e-08 60.8 41 70.7
CiPaw.12G003700 Carya illinoinensis HOM05D000902 ORTHO05D000832 6.5e-08 60.5 40 72.5
CDE05G3058 Ceratophyllum demersum HOM05D000902 ORTHO05D000832 6.5e-08 60.5 40 70.0
Potri.003G167201 Populus trichocarpa HOM05D000902 ORTHO05D000832 6.5e-08 60.5 41 70.7
Sabra03G0122600 Salix brachista HOM05D000902 ORTHO05D000832 6.5e-08 60.5 41 70.7
MBI07_g24742_MAGBIO Magnolia biondii HOM05D000902 ORTHO05D000832 8.5e-08 60.1 40 67.5
MD06G1137200 Malus domestica HOM05D000902 ORTHO05D000832 8.5e-08 60.1 40 72.5
Haze_12461 Corylus avellana HOM05D000902 ORTHO05D000832 1.1e-07 59.7 40 70.0
Gohir.D12G145650 Gossypium hirsutum HOM05D000902 ORTHO05D000832 1.1e-07 59.7 41 68.3
Nn4g22232 Nelumbo nucifera HOM05D000902 ORTHO05D000832 1.1e-07 59.7 40 70.0
Psat7g037320 Pisum sativum HOM05D000902 ORTHO05D000832 1.1e-07 59.7 40 72.5
Manes.14G048300 Manihot esculenta HOM05D000902 ORTHO05D000832 1.9e-07 58.9 40 72.5
PGR044G2719 Punica granatum HOM05D000902 ORTHO05D000832 1.9e-07 58.9 40 70.0
QL10p001889 Quercus lobata HOM05D000902 ORTHO05D000832 2.5e-07 58.5 40 67.5
Solyc03g097520.3 Solanum lycopersicum HOM05D000902 ORTHO05D000832 2.5e-07 58.5 40 65.0
Sopen03g028280 Solanum pennellii HOM05D000902 ORTHO05D000832 2.5e-07 58.5 40 65.0
CSS0007487 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 3.2e-07 58.2 40 65.0
CsaV3_4G005370 Cucumis sativus L. HOM05D000902 ORTHO05D000832 3.2e-07 58.2 63 46.0
Glyma.05G202900 Glycine max HOM05D000902 ORTHO05D000832 3.2e-07 58.2 40 67.5
Glyma.08G010300 Glycine max HOM05D000902 ORTHO05D000832 3.2e-07 58.2 40 67.5
MD09G1078200 Malus domestica HOM05D000902 ORTHO05D000832 3.2e-07 58.2 41 68.3
MD14G1151900 Malus domestica HOM05D000902 ORTHO05D000832 3.2e-07 58.2 40 70.0
Phvul.002G284600 Phaseolus vulgaris HOM05D000902 ORTHO05D000832 3.2e-07 58.2 40 67.5
Pp3c27_2580 Physcomitrium patens HOM05D000902 ORTHO05D000832 3.2e-07 58.2 40 65.0
Cfa009402 Carpinus fangiana HOM05D000902 ORTHO05D000832 4.2e-07 57.8 52 57.7
ClCG06G018110 Citrullus lanatus HOM05D000902 ORTHO05D000832 4.2e-07 57.8 40 70.0
MELO3C026187.2 Cucumis melo HOM05D000902 ORTHO05D000832 4.2e-07 57.8 40 70.0
Nn3g16371 Nelumbo nucifera HOM05D000902 ORTHO05D000832 4.2e-07 57.8 40 70.0
Sed0001603 Sechium edule HOM05D000902 ORTHO05D000832 4.2e-07 57.8 40 70.0
CiPaw.05G105600 Carya illinoinensis HOM05D000902 ORTHO05D000832 5.5e-07 57.4 77 45.5
CDE02G0701 Ceratophyllum demersum HOM05D000902 ORTHO05D000832 5.5e-07 57.4 40 62.5
MBI11_g13057_MAGBIO Magnolia biondii HOM05D000902 ORTHO05D000832 5.5e-07 57.4 41 70.7
Nitab4.5_0003383g0040 Nicotiana tabacum HOM05D000902 ORTHO05D000832 5.5e-07 57.4 40 70.0
THA.LOC104825484 Tarenaya hassleriana HOM05D000902 ORTHO05D000832 5.5e-07 57.4 41 65.9
TAR371G0242 Trochodendron aralioides HOM05D000902 ORTHO05D000832 5.5e-07 57.4 40 65.0
HPP92_009793 Vanilla planifolia HOM05D000902 ORTHO05D000832 5.5e-07 57.4 41 65.9
Aqoxy3G01665 Aquilegia oxysepala HOM05D000902 ORTHO05D000832 7.2e-07 57.0 42 69.0
CAN.G732.3 Capsicum annuum HOM05D000902 ORTHO05D000832 7.2e-07 57.0 40 67.5
Medtr8g096410 Medicago truncatula HOM05D000902 ORTHO05D000832 7.2e-07 57.0 40 67.5
Nitab4.5_0001332g0040 Nicotiana tabacum HOM05D000902 ORTHO05D000832 7.2e-07 57.0 40 70.0
SGA_v2.0_scaffold188G40336 Striga asiatica HOM05D000902 ORTHO05D000832 7.2e-07 57.0 40 67.5
Thecc.03G134800 Theobroma cacao HOM05D000902 ORTHO05D000832 7.2e-07 57.0 40 67.5
TWI18G0596 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 7.2e-07 57.0 41 70.7
Atru.chr11.2382 Acer truncatum HOM05D000902 ORTHO05D000832 9.4e-07 56.6 41 68.3
CANSAT80G0625 Cannabis sativa HOM05D000902 ORTHO05D000832 9.4e-07 56.6 41 68.3
Cpa.g.sc4.155 Carica papaya HOM05D000902 ORTHO05D000832 9.4e-07 56.6 40 70.0
CsaV3_1G000340 Cucumis sativus L. HOM05D000902 ORTHO05D000832 9.4e-07 56.6 40 67.5
MD13G1123700 Malus domestica HOM05D000902 ORTHO05D000832 9.4e-07 56.6 42 69.0
Prupe.1G221200 Prunus persica HOM05D000902 ORTHO05D000832 9.4e-07 56.6 42 66.7
Atru.chr12.2337 Acer truncatum HOM05D000902 ORTHO05D000832 1.2e-06 56.2 40 70.0
Atru.chr6.1870 Acer truncatum HOM05D000902 ORTHO05D000832 1.2e-06 56.2 40 70.0
ATR0582G266 Amborella trichopoda HOM05D000902 ORTHO05D000832 1.2e-06 56.2 40 65.0
CAN.G1001.7 Capsicum annuum HOM05D000902 ORTHO05D000832 1.2e-06 56.2 40 65.0
Dinv23182 Davidia involucrata HOM05D000902 ORTHO05D000832 1.2e-06 56.2 40 67.5
SGA_v2.0_scaffold228G43247 Striga asiatica HOM05D000902 ORTHO05D000832 1.2e-06 56.2 40 65.0
SGA_v2.0_scaffold40G15576 Striga asiatica HOM05D000902 ORTHO05D000832 1.2e-06 56.2 40 65.0
arahy.Tifrunner.gnm1.ann1.LR2QKH Arachis hypogaea HOM05D000902 ORTHO05D000832 1.6e-06 55.8 28 85.7
arahy.Tifrunner.gnm1.ann1.Q161UF Arachis hypogaea HOM05D000902 ORTHO05D000832 1.6e-06 55.8 28 85.7
CANSAT01G2052 Cannabis sativa HOM05D000902 ORTHO05D000832 1.6e-06 55.8 40 60.0
CBR_g22445 Chara braunii HOM05D000902 ORTHO05D000832 1.6e-06 55.8 42 66.7
Lalb_Chr13g0297161 Lupinus albus HOM05D000902 ORTHO05D000832 1.6e-06 55.8 28 85.7
Nitab4.5_0000913g0070 Nicotiana tabacum HOM05D000902 ORTHO05D000832 1.6e-06 55.8 40 67.5
Oeu011348.1 Olea europaea HOM05D000902 ORTHO05D000832 1.6e-06 55.8 43 65.1
RcHm_v2.0_Chr2g0142631 Rosa chinensis HOM05D000263 ORTHO05D000213 1.6e-06 55.8 28 82.1
Sp6g12880 Schrenkiella parvula HOM05D000902 ORTHO05D000832 1.6e-06 55.8 40 67.5
TWI14G0729 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 1.6e-06 55.8 68 45.6
GSVIVG01008587001 Vitis vinifera HOM05D000902 ORTHO05D000832 1.6e-06 55.8 40 67.5
Carub.0007s1608 Capsella rubella HOM05D000902 ORTHO05D000832 2.1e-06 55.5 40 67.5
Eucgr.B03533 Eucalyptus grandis HOM05D000902 ORTHO05D000832 2.1e-06 55.5 41 65.9
FvH4_4g23220 Fragaria vesca HOM05D000902 ORTHO05D000832 2.1e-06 55.5 42 64.3
FvH4_5g08810 Fragaria vesca HOM05D000902 ORTHO05D000832 2.1e-06 55.5 40 62.5
FAN04G2273 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.1e-06 55.5 40 62.5
FAN07G0834 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.1e-06 55.5 42 64.3
FAN12G0496 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.1e-06 55.5 42 64.3
FAN13G2951 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.1e-06 55.5 40 62.5
FAN17G0201 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.1e-06 55.5 37 59.5
FAN18G1525 Fragaria x ananassa HOM05D000902 ORTHO05D000832 2.1e-06 55.5 40 62.5
Nitab4.5_0001771g0050 Nicotiana tabacum HOM05D000902 ORTHO05D000832 2.1e-06 55.5 40 67.5
RcHm_v2.0_Chr4g0429571 Rosa chinensis HOM05D000902 ORTHO05D000832 2.1e-06 55.5 42 64.3
CARHR257520 Cardamine hirsuta HOM05D000902 ORTHO05D000832 2.7e-06 55.1 40 65.0
Eucgr.K02700 Eucalyptus grandis HOM05D000902 ORTHO05D000832 2.7e-06 55.1 40 70.0
PSO017G5166 Papaver somniferum HOM05D000902 ORTHO05D000832 2.7e-06 55.1 43 65.1
Potri.012G102800 Populus trichocarpa HOM05D000902 ORTHO05D000832 2.7e-06 55.1 40 67.5
RcHm_v2.0_Chr7g0189451 Rosa chinensis HOM05D000902 ORTHO05D000832 2.7e-06 55.1 40 62.5
Sabra15G0121300 Salix brachista HOM05D000902 ORTHO05D000832 2.7e-06 55.1 40 67.5
SMO356G0533 Selaginella moellendorffii HOM05D000902 ORTHO05D000832 2.7e-06 55.1 40 60.0
TPR.G12971 Trifolium pratense HOM05D000902 ORTHO05D000832 2.7e-06 55.1 29 79.3
AL7G28220 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 67.5
AL8G24940 Arabidopsis lyrata HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 65.0
AT4G24970 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 67.5
AT5G50780 Arabidopsis thaliana HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 65.0
MSTRG.11259 Avicennia marina HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 65.0
Carub.0008s1068 Capsella rubella HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 65.0
Lj4g0027865 Lotus japonicus HOM05D000902 ORTHO05D000832 3.6e-06 54.7 28 82.1
Prupe.5G147000 Prunus persica HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 65.0
TWI39G0780 Tripterygium wilfordii HOM05D000902 ORTHO05D000832 3.6e-06 54.7 40 67.5
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.6e-06 54.7 43 62.8
Actinidia25552 Actinidia chinensis HOM05D000902 ORTHO05D000832 4.7e-06 54.3 40 62.5
CSS0008066 Camellia sinensis var. sinensis HOM05D000902 ORTHO05D000832 4.7e-06 54.3 40 65.0
Lsat_1_v5_gn_5_10920 Lactuca sativa HOM05D000902 ORTHO05D000832 4.7e-06 54.3 40 60.0
Peaxi162Scf00257g00217 Petunia axillaris HOM05D000902 ORTHO05D000832 4.7e-06 54.3 40 65.0
Pp3c9_8990 Physcomitrium patens HOM05D000902 ORTHO05D000832 4.7e-06 54.3 40 67.5
Sp7g22960 Schrenkiella parvula HOM05D000902 ORTHO05D000832 4.7e-06 54.3 40 67.5
PGSC0003DMG400038165 Solanum tuberosum HOM05D000902 ORTHO05D000832 4.7e-06 54.3 68 42.6
ATR0661G195 Amborella trichopoda HOM05D000902 ORTHO05D000832 6.1e-06 53.9 40 65.0
CARHR152750 Cardamine hirsuta HOM05D000902 ORTHO05D000832 6.1e-06 53.9 42 59.5
Migut.L00746 Erythranthe guttata HOM05D000902 ORTHO05D000832 6.1e-06 53.9 40 65.0
Migut.L00798 Erythranthe guttata HOM05D000902 ORTHO05D000832 6.1e-06 53.9 40 65.0
Hund02463 Selenicereus undatus HOM05D000902 ORTHO05D000832 6.1e-06 53.9 40 65.0
BcaC06g32845 Brassica carinata HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
BcaC09g50827 Brassica carinata HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
BcaNung03989 Brassica carinata HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
A01p16260 Brassica napus HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
A03p55660 Brassica napus HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
C01p20260 Brassica napus HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
C07p53900 Brassica napus HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
BolC1t01956H Brassica oleracea HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
BolC7t45880H Brassica oleracea HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
BraA01t01563Z Brassica rapa HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
BraA03t14633Z Brassica rapa HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
Cc04_g09610 Coffea canephora HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 65.0
MELO3C016411.2 Cucumis melo HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 52.5
Dinv11201 Davidia involucrata HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 65.0
Thhalv10024553m.g Eutrema salsugineum HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 67.5
Gorai.001G055900 Gossypium raimondii HOM05D000902 ORTHO05D000832 8.0e-06 53.5 55 50.9
HanXRQChr02g0034131 Helianthus annuus HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 57.5
Medtr8g076580 Medicago truncatula HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 60.0
Psat4g096840 Pisum sativum HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 60.0
PGR102G2849 Punica granatum HOM05D000902 ORTHO05D000832 8.0e-06 53.5 40 57.5
vmacro16731 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 8.0e-06 53.5 51 54.9
VMungo0251G1748 Vigna mungo HOM05D000902 ORTHO05D000832 8.0e-06 53.5 29 79.3


User provided reference genes

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