Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.1e-286 989.2 484 100.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 6.3e-237 823.9 485 84.3
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.0e-234 816.6 485 83.9
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 6.2e-192 674.5 480 70.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.2e-192 674.5 480 70.8
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.2e-189 666.0 372 89.8
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.3e-189 664.1 370 89.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 5.4e-188 661.4 480 69.6
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.9e-185 652.9 481 69.6
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 3.3e-185 652.1 492 67.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.9e-181 639.0 485 66.6
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 6.4e-181 637.9 491 65.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 2.7e-179 632.5 487 66.1
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 3.5e-179 632.1 478 66.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.9e-177 626.3 491 65.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 9.6e-177 624.0 485 65.8
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 9.6e-177 624.0 488 66.2
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.1e-176 622.9 486 65.4
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.4e-175 620.2 480 65.2
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.4e-175 620.2 482 65.4
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.1e-175 619.0 478 64.9
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.1e-175 619.0 478 64.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 4.0e-175 618.6 477 65.6
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.2e-175 618.2 489 64.2
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.2e-174 617.1 487 65.1
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.2e-174 617.1 478 66.5
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.5e-174 616.7 489 64.4
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.4e-174 615.5 481 63.2
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.4e-174 615.5 477 64.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 4.4e-174 615.1 491 63.7
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.4e-174 615.1 478 65.1
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 5.8e-174 614.8 484 65.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.7e-173 613.2 480 65.0
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 2.2e-173 612.8 486 64.4
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.8e-173 612.1 486 64.4
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.8e-173 612.1 486 64.4
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 7.1e-172 607.8 449 67.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 9.3e-172 607.4 446 66.8
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 3.5e-171 605.5 479 63.5
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.9e-170 602.1 457 67.6
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.9e-169 599.7 399 72.9
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 6.2e-168 594.7 490 61.8
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 6.2e-168 594.7 482 65.1
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.1e-167 592.4 437 65.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.1e-167 592.4 482 62.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.5e-166 590.1 486 62.1
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.9e-165 585.9 486 62.1
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 1.4e-164 583.6 399 70.2
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.2e-163 580.5 451 64.7
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.6e-163 580.1 476 60.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 7.9e-163 577.8 481 61.3
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.3e-162 577.0 472 60.8
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.3e-161 572.4 473 60.7
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.3e-160 570.5 452 62.8
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 6.2e-160 568.2 448 64.3
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.3e-159 565.1 477 59.7
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 9.0e-159 564.3 488 60.2
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 9.0e-159 564.3 452 62.6
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.5e-158 563.5 410 65.9
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.5e-158 563.5 477 59.5
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.5e-158 563.5 550 55.5
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.3e-157 560.5 485 59.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 8.4e-157 557.8 453 63.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.1e-156 557.4 732 45.5
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 3.2e-156 555.8 475 59.6
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 5.5e-156 555.1 476 59.0
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 9.3e-156 554.3 429 66.2
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.9e-155 551.2 476 58.8
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.9e-154 548.9 461 60.7
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.9e-153 546.6 402 65.9
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 3.3e-153 545.8 491 58.5
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.1e-152 543.1 475 59.6
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 4.0e-151 538.9 464 60.3
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 9.0e-151 537.7 397 66.8
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.8e-150 535.0 459 59.5
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.8e-150 535.0 504 58.5
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.3e-149 533.9 480 56.5
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.2e-149 533.1 482 59.3
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-148 530.0 418 64.6
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.2e-148 529.3 419 64.9
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 9.3e-148 527.7 402 62.7
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-147 527.3 478 55.2
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.2e-147 527.3 523 55.6
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.6e-147 526.9 405 65.9
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.7e-147 526.2 499 56.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.6e-147 525.4 419 64.4
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 4.6e-147 525.4 401 65.1
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-146 523.5 456 58.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-146 523.5 456 58.6
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.8e-146 523.5 456 58.6
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.3e-146 523.1 432 59.7
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.3e-146 523.1 415 63.9
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.0e-146 522.7 478 54.4
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 3.0e-146 522.7 396 64.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.7e-146 521.5 430 61.9
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 6.7e-146 521.5 402 62.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-145 520.4 396 65.9
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.5e-145 520.4 420 65.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-145 520.0 423 63.1
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-145 519.6 485 56.7
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 4.3e-145 518.8 436 58.3
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 7.4e-145 518.1 487 56.5
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 9.7e-145 517.7 436 62.4
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.3e-144 517.3 483 55.1
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.2e-144 516.5 550 53.3
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.8e-144 516.2 428 59.1
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 3.7e-144 515.8 406 64.0
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-143 513.8 402 60.4
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.4e-143 513.8 485 55.9
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.8e-143 513.5 458 58.3
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.4e-143 513.1 458 58.3
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.1e-143 512.7 485 55.7
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.1e-143 512.7 405 63.0
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.3e-143 511.9 488 57.6
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 6.9e-143 511.5 549 52.1
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 9.0e-143 511.1 428 57.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 9.0e-143 511.1 406 63.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 9.0e-143 511.1 496 55.4
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-142 509.6 428 57.5
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.6e-142 509.6 428 57.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.5e-142 508.8 402 61.4
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-141 507.3 487 54.4
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.9e-140 503.4 480 54.4
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.9e-140 503.4 508 52.4
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.9e-140 503.4 450 57.1
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.5e-140 503.1 402 60.0
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 7.2e-140 501.5 508 54.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.6e-139 500.4 417 58.5
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 3.9e-138 495.7 401 62.6
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.9e-138 495.7 483 55.3
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-137 494.2 418 57.7
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.1e-137 494.2 490 53.5
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 2.5e-137 493.0 484 54.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 6.5e-133 478.4 406 60.1
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.9e-132 476.9 319 73.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 3.2e-132 476.1 624 45.2
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.2e-132 476.1 485 52.6
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 9.4e-132 474.6 493 50.9
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 9.7e-129 464.5 332 65.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.9e-122 442.6 400 53.8
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 3.3e-121 439.5 405 56.0
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.6e-118 429.9 373 59.5
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.5e-118 429.5 400 51.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.5e-116 424.1 404 52.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 9.4e-116 421.4 312 64.4
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 7.2e-108 395.2 364 53.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.7e-88 329.7 322 55.9
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.1e-82 310.1 220 68.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 4.1e-79 299.7 245 62.0
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-77 294.7 218 63.3
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 3.6e-75 286.6 277 56.0
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.1e-70 270.8 224 63.4
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.6e-70 269.6 254 57.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.1e-66 258.5 311 45.0
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 1.1e-63 248.4 232 55.6
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.7e-54 217.2 422 38.2
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 3.3e-52 210.3 283 42.8
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 4.9e-48 196.4 496 30.6
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.8e-41 172.9 262 41.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.0e-37 162.2 101 78.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-33 148.7 173 48.6
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-33 148.3 148 50.0
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.3e-29 135.2 286 31.8
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.5e-25 121.7 613 21.7
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 3.4e-25 120.6 130 50.0
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.3e-24 118.6 117 52.1
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 6.5e-24 116.3 121 53.7
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.4e-18 98.6 114 48.2
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.2e-16 91.3 102 49.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 2.0e-12 78.2 341 25.2
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 4.1e-10 70.5 47 63.8
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.3e-10 70.1 47 66.0
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 5.5e-07 60.1 35 74.3
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 6.1e-06 56.6 63 49.2


User provided reference genes

Program Settings