Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 2.0e-118 429.1 210 100.0
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 6.1e-88 327.8 219 76.7
ClCG01G000680 Citrullus lanatus HOM05D004719 ORTHO05D005519 4.0e-87 325.1 252 71.0
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 8.9e-87 323.9 226 75.7
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 2.9e-85 318.9 226 75.2
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 4.0e-71 271.9 220 66.8
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 8.9e-71 270.8 225 63.6
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.5e-70 270.0 220 62.3
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 4.4e-70 268.5 193 71.5
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 5.8e-70 268.1 222 64.9
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.7e-69 266.5 220 61.4
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 8.3e-69 264.2 222 64.4
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 8.3e-69 264.2 223 65.0
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 7.8e-67 257.7 234 59.0
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 7.8e-67 257.7 223 61.0
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 1.3e-66 256.9 230 59.1
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 2.3e-66 256.1 220 62.3
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 2.3e-66 256.1 229 59.4
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 5.1e-66 255.0 222 62.2
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 5.6e-65 251.5 219 60.3
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 5.6e-65 251.5 222 59.5
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 5.6e-65 251.5 226 60.2
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 5.6e-65 251.5 217 61.3
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 2.1e-64 249.6 233 58.8
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.1e-64 249.6 222 58.6
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 8.1e-64 247.7 224 59.8
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 8.1e-64 247.7 224 59.8
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.8e-63 246.5 209 61.2
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 4.0e-63 245.4 220 58.2
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 6.8e-63 244.6 223 58.3
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 8.9e-63 244.2 242 57.4
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 1.5e-62 243.4 220 60.5
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 2.6e-62 242.7 227 56.4
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 2.6e-62 242.7 183 66.7
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 3.4e-62 242.3 219 59.4
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 5.8e-62 241.5 235 57.0
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 7.6e-62 241.1 228 57.5
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 1.3e-61 240.4 219 57.5
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.3e-61 240.4 212 60.4
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.3e-61 240.4 227 55.1
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 2.9e-61 239.2 227 56.8
Hma1.2p1_0142F.1_g064100 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 2.9e-61 239.2 233 56.7
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 1.1e-60 237.3 227 54.6
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 1.4e-60 236.9 204 61.8
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 3.2e-60 235.7 236 55.1
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 4.2e-60 235.3 231 56.3
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 7.1e-60 234.6 223 59.2
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 1.2e-59 233.8 229 56.3
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 1.6e-59 233.4 225 56.0
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.1e-59 233.0 188 61.7
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 2.7e-59 232.6 233 55.4
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.7e-59 232.6 189 60.8
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 3.5e-59 232.3 221 59.3
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 4.6e-59 231.9 223 56.5
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 6.0e-59 231.5 218 57.8
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.3e-58 230.3 226 56.2
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 1.7e-58 229.9 245 53.1
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 1.7e-58 229.9 218 57.3
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 2.3e-58 229.6 188 61.2
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 5.1e-58 228.4 232 58.2
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 5.1e-58 228.4 232 56.9
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 5.1e-58 228.4 220 55.9
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 5.1e-58 228.4 222 53.2
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 6.6e-58 228.0 221 56.1
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.6e-58 228.0 219 58.0
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 8.7e-58 227.6 158 69.6
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 8.7e-58 227.6 233 52.8
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 1.9e-57 226.5 235 51.9
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.9e-57 226.5 236 51.7
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.9e-57 226.5 222 55.0
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 4.3e-57 225.3 204 59.8
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 5.6e-57 224.9 242 50.8
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 7.3e-57 224.6 221 55.7
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.3e-57 224.6 237 51.5
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 7.3e-57 224.6 222 53.2
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 7.3e-57 224.6 218 53.2
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 9.6e-57 224.2 222 54.1
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 1.3e-56 223.8 223 56.1
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 1.6e-56 223.4 210 55.7
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 2.1e-56 223.0 222 55.0
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 2.1e-56 223.0 223 56.5
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 2.1e-56 223.0 216 55.6
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 2.1e-56 223.0 216 55.6
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.1e-56 223.0 224 54.9
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 3.6e-56 222.2 237 51.9
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 6.2e-56 221.5 240 51.7
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 6.2e-56 221.5 217 53.0
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.1e-55 220.7 184 58.7
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.4e-55 220.3 223 53.8
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 1.4e-55 220.3 224 55.4
Psat5g080520 Pisum sativum HOM05D004719 ORTHO05D005519 1.8e-55 219.9 216 53.7
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.4e-55 219.5 223 54.7
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 3.1e-55 219.2 208 59.1
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 4.0e-55 218.8 200 56.0
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 5.3e-55 218.4 210 55.7
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 6.9e-55 218.0 194 59.3
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 2.0e-54 216.5 228 53.1
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 7.6e-54 214.5 224 53.1
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 1.7e-53 213.4 216 54.2
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 4.9e-53 211.8 210 54.8
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 4.9e-53 211.8 216 52.3
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 8.4e-53 211.1 215 53.5
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 8.4e-53 211.1 152 65.8
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 1.1e-52 210.7 230 52.6
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.1e-52 210.7 218 51.4
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 1.1e-52 210.7 216 51.9
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 2.4e-52 209.5 227 51.1
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 2.4e-52 209.5 230 50.9
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 4.2e-52 208.8 233 49.4
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 7.1e-52 208.0 213 52.6
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 1.2e-51 207.2 233 49.4
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 4.6e-51 205.3 239 49.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 4.6e-51 205.3 210 51.9
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 4.6e-51 205.3 222 51.8
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 7.8e-51 204.5 220 52.3
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 1.0e-50 204.1 215 51.2
CDE08G1019 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 3.9e-50 202.2 219 50.2
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 6.6e-50 201.4 217 49.3
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 8.7e-50 201.1 177 60.5
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 1.1e-49 200.7 151 64.9
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 1.5e-49 200.3 214 50.5
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 1.9e-49 199.9 189 54.5
MBI06_g04286_MAGBIO Magnolia biondii HOM05D004719 ORTHO05D005519 2.5e-49 199.5 220 53.6
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 1.6e-48 196.8 220 48.2
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 6.2e-48 194.9 171 55.6
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 6.2e-48 194.9 244 45.9
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 8.1e-48 194.5 206 51.0
Lj1C1011G7 Lonicera japonica HOM05D004719 ORTHO05D005519 5.8e-46 188.3 130 67.7
CDE02G1124 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.3e-45 187.2 219 48.4
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.3e-45 187.2 237 44.7
TPR.G33870 Trifolium pratense HOM05D004719 ORTHO05D005519 2.9e-45 186.0 200 52.5
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 1.2e-43 180.6 244 41.4
Actinidia34185 Actinidia chinensis HOM05D004719 ORTHO05D005519 3.5e-43 179.1 145 59.3
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 1.9e-41 173.3 138 64.5
PGR142G4196 Punica granatum HOM05D004719 ORTHO05D005519 1.1e-39 167.5 212 47.2
FAN06G1194 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.2e-37 159.8 142 54.9
VMungo0647G2259 Vigna mungo HOM05D004719 ORTHO05D005519 8.4e-37 157.9 128 58.6
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 3.0e-34 149.4 226 43.4
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 7.4e-33 144.8 193 46.1
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 1.8e-31 140.2 204 44.1
Pp3c1_11420 Physcomitrium patens HOM05D004719 ORTHO05D005519 3.9e-26 122.5 209 37.8
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 1.9e-25 120.2 150 52.7
C03p17810 Brassica napus HOM05D004719 ORTHO05D005519 1.7e-21 107.1 184 41.3
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.7e-21 107.1 73 68.5
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 6.5e-21 105.1 66 72.7
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.0e-18 97.8 56 78.6
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.8e-18 97.1 55 81.8
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 1.8e-18 97.1 58 74.1
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 6.7e-18 95.1 81 64.2
Solyc06g036500.1 Solanum lycopersicum HOM05D004719 ORTHO05D005519 1.4e-12 77.4 110 40.9
FvH4_6g34200 Fragaria vesca HOM05D004719 ORTHO05D005519 6.1e-11 72.0 47 68.1
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 6.7e-10 68.6 73 50.7
Hund30245 Selenicereus undatus HOM05D004719 ORTHO05D005519 1.1e-09 67.8 93 50.5
CBR_g83324 Chara braunii HOM05D004719 ORTHO05D005519 4.4e-09 65.9 72 43.1
FAN16G3662 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.4e-09 65.1 39 71.8
CDE09G0250 Ceratophyllum demersum HOM05D004719 ORTHO05D005519 1.7e-08 63.9 50 56.0
MCO03G325 Micromonas commoda HOM05D004719 ORTHO05D005519 5.3e-07 58.9 137 31.4
FAN25G3581 Fragaria x ananassa HOM05D017504 ORTHO05D022678 3.5e-06 56.2 30 83.3
FAN06G3132 Fragaria x ananassa HOM05D004719 ORTHO05D005519 7.7e-06 55.1 45 55.6
Sopen06g012490 Solanum pennellii HOM05D004719 ORTHO05D005519 7.7e-06 55.1 133 32.3


User provided reference genes

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