Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 3.1e-262 907.9 455 100.0
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 1.6e-242 842.4 456 92.5
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.6e-242 842.4 456 93.2
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 6.1e-242 840.5 456 92.1
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 8.8e-241 836.6 456 92.1
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 1.4e-225 786.2 456 86.2
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 2.2e-223 778.9 456 85.5
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 2.2e-223 778.9 455 84.6
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 3.7e-223 778.1 456 85.5
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 1.2e-221 773.1 456 84.9
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 3.9e-220 768.1 456 84.6
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 1.1e-219 766.5 464 83.8
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.9e-219 765.8 458 82.8
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 3.3e-219 765.0 456 84.0
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 7.3e-219 763.8 456 83.6
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 7.3e-219 763.8 456 83.6
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 9.5e-219 763.5 456 84.2
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 1.2e-218 763.1 450 84.2
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 2.1e-218 762.3 456 83.8
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 4.7e-218 761.1 456 82.7
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 1.0e-217 760.0 460 82.8
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 1.8e-217 759.2 456 83.1
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 3.1e-217 758.4 456 83.3
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 6.8e-217 757.3 457 82.3
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 2.6e-216 755.4 456 83.8
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 3.4e-216 755.0 456 83.1
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 7.5e-216 753.8 456 82.2
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 1.3e-215 753.1 456 82.0
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.3e-215 753.1 457 82.5
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 1.3e-215 753.1 457 82.5
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 1.3e-215 753.1 418 87.6
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.7e-215 752.7 457 82.5
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 1.7e-215 752.7 442 84.6
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 2.2e-215 752.3 461 82.0
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 3.7e-215 751.5 459 81.9
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 3.7e-215 751.5 434 85.9
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 4.9e-215 751.1 459 81.9
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 8.3e-215 750.4 456 82.0
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.1e-214 750.0 456 83.1
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 1.4e-214 749.6 454 82.4
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 1.9e-214 749.2 455 81.8
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 1.9e-214 749.2 431 85.2
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 2.4e-214 748.8 462 81.8
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 3.2e-214 748.4 456 81.8
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 3.2e-214 748.4 456 80.5
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 9.2e-214 746.9 462 81.6
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 2.0e-213 745.7 460 82.0
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 2.7e-213 745.3 452 81.9
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 6.0e-213 744.2 462 81.4
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 6.0e-213 744.2 462 81.2
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 7.8e-213 743.8 451 81.6
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 7.8e-213 743.8 451 81.6
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.0e-212 743.4 430 84.2
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 3.0e-212 741.9 462 81.2
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 3.0e-212 741.9 454 80.8
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 8.6e-212 740.3 462 81.0
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 8.6e-212 740.3 443 82.2
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 7.3e-211 737.3 437 84.7
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 9.5e-211 736.9 455 80.2
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 2.1e-210 735.7 464 78.9
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 2.8e-210 735.3 416 86.8
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 6.2e-210 734.2 455 80.0
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 6.2e-210 734.2 463 78.8
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 2.3e-209 732.3 457 79.4
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 3.1e-209 731.9 466 78.8
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 4.0e-209 731.5 458 79.3
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 6.8e-209 730.7 457 79.6
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.5e-208 729.6 457 79.4
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 9.9e-208 726.9 457 79.0
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 9.9e-208 726.9 458 79.9
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 9.9e-208 726.9 458 79.9
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 2.9e-207 725.3 459 79.5
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 4.9e-207 724.5 457 78.8
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 6.4e-207 724.2 465 77.4
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 1.1e-206 723.4 424 84.0
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 1.4e-206 723.0 458 79.7
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 1.4e-206 723.0 459 78.9
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 1.4e-206 723.0 459 78.9
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 1.4e-206 723.0 458 79.7
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 1.4e-206 723.0 506 73.7
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 1.9e-206 722.6 462 79.9
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.9e-206 722.6 413 85.5
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 3.2e-206 721.8 463 77.5
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 1.6e-205 719.5 429 84.8
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 1.6e-205 719.5 429 84.8
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 4.6e-205 718.0 410 85.9
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 6.0e-205 717.6 424 83.7
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 1.3e-204 716.5 465 77.4
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 5.1e-204 714.5 461 79.2
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 5.1e-204 714.5 468 76.5
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 6.6e-204 714.1 410 84.4
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 6.6e-204 714.1 417 83.2
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 2.5e-203 712.2 463 77.5
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 4.3e-203 711.4 424 82.3
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 9.5e-203 710.3 437 80.8
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 4.0e-201 704.9 456 77.2
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 7.6e-200 700.7 438 79.9
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 6.6e-196 687.6 391 85.7
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 3.4e-192 675.2 485 72.2
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 1.4e-190 669.8 455 76.3
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 2.4e-190 669.1 384 85.2
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 1.0e-188 663.7 384 84.4
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 6.6e-188 661.0 441 75.7
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 5.6e-187 657.9 524 67.2
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 3.6e-186 655.2 454 73.8
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 6.9e-185 651.0 460 73.0
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 2.6e-184 649.0 459 72.8
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 3.4e-184 648.7 397 81.9
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 1.6e-181 639.8 433 74.6
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 2.3e-180 636.0 444 73.4
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 2.5e-179 632.5 413 75.8
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 8.1e-178 627.5 436 72.7
SMO351G0256 Selaginella moellendorffii HOM05D004870 ORTHO05D006061 9.9e-176 620.5 413 75.8
Mapoly0020s0155 Marchantia polymorpha HOM05D004870 ORTHO05D006061 1.3e-175 620.2 411 74.7
Pp3c9_12870 Physcomitrium patens HOM05D004870 ORTHO05D006061 1.7e-175 619.8 409 74.8
Duzib248G0882 Durio zibethinus HOM05D004870 ORTHO05D006061 2.7e-173 612.5 457 70.2
Pp3c15_6200 Physcomitrium patens HOM05D004870 ORTHO05D006061 5.6e-171 604.7 410 73.4
MELO3C015352.2 Cucumis melo HOM05D004870 ORTHO05D006061 6.9e-169 597.8 330 92.1
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 4.6e-165 585.1 483 65.6
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 1.0e-156 557.4 425 68.5
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 1.5e-147 526.9 587 52.3
CBR_g49488 Chara braunii HOM05D004870 ORTHO05D006061 2.4e-145 519.6 427 60.7
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.1e-139 500.7 330 77.3
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 4.7e-133 478.8 410 58.8
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 4.4e-123 445.7 369 61.5
PSO339G2837 Papaver somniferum HOM05D004870 ORTHO05D006061 2.7e-120 436.4 401 57.6
AagrBONN_evm.TU.Sc2ySwM_340.305 Anthoceros agrestis HOM05D004870 ORTHO05D006061 1.5e-110 404.1 275 74.2
MCO08G060 Micromonas commoda HOM05D004870 ORTHO05D006061 2.8e-109 399.8 452 48.7
AagrBONN_evm.TU.Sc2ySwM_228.5917 Anthoceros agrestis HOM05D004870 ORTHO05D006061 2.6e-107 393.3 407 54.1
Potri.007G074201 Populus trichocarpa HOM05D004870 ORTHO05D006061 5.8e-107 392.1 252 77.0
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.5e-78 297.7 189 80.4
Thecc.02G156000 Theobroma cacao HOM05D004870 ORTHO05D006061 9.6e-78 295.0 173 85.0
Haze_27018 Corylus avellana HOM05D004870 ORTHO05D006061 6.9e-76 288.9 387 42.4
PSO782G3529 Papaver somniferum HOM05D004870 ORTHO05D006061 4.9e-74 282.7 310 51.9
Ca_29057_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 4.9e-58 229.6 357 39.8
SEGI_23530 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 6.4e-58 229.2 136 77.9
Cfa021670 Carpinus fangiana HOM05D004870 ORTHO05D006061 8.7e-47 192.2 386 35.2
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 6.3e-45 186.0 117 80.3
C08p27210 Brassica napus HOM05D004870 ORTHO05D006061 1.3e-29 135.2 83 74.7
vmacro15994 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 2.2e-29 134.4 72 87.5
Thecc.02G156100 Theobroma cacao HOM05D004870 ORTHO05D006061 1.1e-28 132.1 69 89.9
RcHm_v2.0_Chr5g0064321 Rosa chinensis HOM05D004870 ORTHO05D006061 2.6e-27 127.5 81 82.7
C04p22220 Brassica napus HOM05D004870 ORTHO05D006061 4.4e-22 110.2 100 61.0
BcaC02g11010 Brassica carinata HOM05D004870 ORTHO05D006061 9.7e-22 109.0 76 71.1
RcHm_v2.0_Chr5g0050031 Rosa chinensis HOM05D004870 ORTHO05D006061 1.4e-20 105.1 67 83.6
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 5.2e-15 86.7 296 26.0
PGR142G1834 Punica granatum HOM05D004870 ORTHO05D006061 6.8e-15 86.3 59 76.3
arahy.Tifrunner.gnm1.ann1.7S4D4S Arachis hypogaea HOM05D004870 ORTHO05D000194 2.0e-14 84.7 61 70.5
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 5.0e-10 70.1 50 66.0
C02p39510 Brassica napus HOM05D000461 ORTHO05D016800 8.0e-08 62.8 46 65.2
BolC2t09964H Brassica oleracea HOM05D000461 ORTHO05D016800 8.0e-08 62.8 46 65.2
AUR62002710 Chenopodium quinoa HOM05D004870 ORTHO05D138226 1.4e-07 62.0 31 93.5
CDE05G3312 Ceratophyllum demersum HOM05D004870 ORTHO05D130477 4.0e-07 60.5 76 47.4
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 3.4e-06 57.4 156 28.2
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 5.7e-06 56.6 162 25.9
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 9.8e-06 55.8 156 28.2
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 9.8e-06 55.8 157 26.1


User provided reference genes

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