Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 0.0e+00 1703.3 879 100.0
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 0.0e+00 1411.4 888 83.2
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 0.0e+00 1339.3 878 80.8
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 0.0e+00 1329.7 888 79.7
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 0.0e+00 1328.2 874 80.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.9e-229 798.9 937 52.7
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.7e-229 798.1 897 53.8
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 1.1e-228 797.3 899 53.1
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 3.5e-225 785.8 907 52.7
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.5e-225 785.4 901 52.6
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 4.5e-225 785.4 903 52.4
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 2.2e-224 783.1 903 52.3
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 6.5e-224 781.6 899 53.5
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 3.6e-222 775.8 897 52.7
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 5.2e-221 771.9 884 53.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.6e-220 769.6 898 51.8
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 1.7e-219 766.9 847 51.6
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.8e-219 766.1 877 52.9
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 2.4e-218 763.1 906 51.5
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 9.1e-218 761.1 917 51.3
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.6e-217 759.6 904 51.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.2e-215 752.3 900 51.3
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.7e-214 748.8 900 51.0
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.2e-213 745.3 900 49.7
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 2.6e-212 743.0 906 50.8
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 8.3e-211 738.0 955 47.7
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 5.0e-208 728.8 870 49.9
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.1e-207 727.6 876 51.4
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.5e-207 727.2 902 49.2
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.5e-204 717.2 907 48.3
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 1.7e-203 713.8 895 50.1
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.4e-202 710.7 907 49.5
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.8e-202 710.3 900 47.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-202 709.5 900 47.4
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 5.4e-202 708.8 891 49.6
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.0e-202 708.4 871 48.3
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 9.5e-199 698.0 902 48.7
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 1.8e-197 693.7 903 48.9
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 3.0e-197 693.0 873 49.5
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 6.8e-197 691.8 897 48.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 8.9e-197 691.4 880 49.4
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.2e-196 691.0 878 48.9
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 5.7e-196 688.7 678 59.7
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.2e-195 686.8 862 47.9
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.4e-194 684.1 890 48.9
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 3.5e-193 679.5 902 47.3
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 8.6e-192 674.9 919 48.1
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.5e-191 673.3 904 44.9
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.6e-190 670.6 906 44.8
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 1.6e-190 670.6 881 47.6
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.1e-190 668.7 878 45.8
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.4e-189 667.5 898 46.8
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.2e-188 664.5 893 47.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.5e-188 661.8 859 46.0
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 9.8e-188 661.4 897 47.4
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.8e-188 661.4 902 44.6
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.2e-187 660.2 878 45.6
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.1e-186 657.9 893 45.2
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 2.7e-185 653.3 903 47.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 2.5e-183 646.7 898 47.2
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 3.3e-183 646.4 942 45.3
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 3.3e-183 646.4 887 47.7
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 9.5e-183 644.8 907 47.4
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 4.0e-181 639.4 880 47.6
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.7e-179 634.0 879 45.3
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 7.8e-177 625.2 892 44.1
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 3.0e-176 623.2 884 47.2
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.0e-173 612.8 871 46.0
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.9e-173 611.7 885 45.2
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 2.0e-172 610.5 929 44.7
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.4e-172 609.4 896 45.4
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-171 607.1 786 49.0
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.9e-171 606.7 901 43.5
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 1.1e-170 604.7 864 44.8
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.4e-170 603.6 879 45.6
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 2.4e-170 603.6 908 44.1
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 1.7e-168 597.4 913 44.2
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 3.9e-168 596.3 901 44.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.1e-167 594.7 917 44.5
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 1.9e-167 594.0 929 43.2
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.4e-165 587.0 894 44.1
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 3.4e-164 583.2 679 53.0
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 7.8e-161 572.0 888 43.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 3.0e-160 570.1 900 45.0
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 3.9e-160 569.7 613 55.0
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.9e-160 569.7 887 44.5
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.5e-159 567.0 887 43.5
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 1.6e-158 564.3 850 43.2
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 1.6e-158 564.3 868 44.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.6e-158 563.1 890 43.4
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 4.0e-157 559.7 883 44.6
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 7.6e-156 555.4 893 42.9
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-155 554.7 891 41.4
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 1.7e-155 554.3 896 42.3
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 3.9e-152 543.1 693 49.4
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 6.9e-149 532.3 851 41.5
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.2e-147 527.3 908 41.4
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 4.9e-147 526.2 925 42.1
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 8.4e-147 525.4 893 42.4
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 8.4e-147 525.4 853 43.0
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.3e-146 521.9 892 42.0
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 7.4e-143 512.3 896 40.4
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 8.1e-142 508.8 893 41.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 5.3e-141 506.1 887 42.2
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.3e-141 506.1 923 40.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 9.0e-141 505.4 878 41.1
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 1.2e-140 505.0 878 40.4
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 6.5e-139 499.2 864 41.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.9e-138 497.7 862 41.2
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 3.2e-138 496.9 906 40.3
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.0e-136 491.9 893 39.8
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 6.7e-136 489.2 901 41.4
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 2.1e-134 484.2 888 41.9
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 8.2e-134 482.3 904 40.4
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 2.2e-131 474.2 854 39.3
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 6.5e-131 472.6 504 55.2
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 1.1e-127 461.8 856 40.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.5e-127 461.5 835 40.0
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 7.4e-127 459.1 914 40.6
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 4.8e-126 456.4 913 38.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.3e-126 456.1 867 39.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.1e-125 455.3 920 40.2
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.4e-125 454.1 919 40.3
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 3.1e-125 453.8 901 39.0
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 4.1e-125 453.4 702 44.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 6.9e-125 452.6 896 38.7
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.0e-124 451.1 919 39.9
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 4.5e-124 449.9 896 38.4
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.3e-123 448.4 915 40.3
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.7e-123 448.0 898 38.8
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.7e-123 448.0 898 38.8
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.9e-122 444.5 904 39.2
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.8e-120 435.6 926 37.0
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.8e-118 430.6 665 43.6
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 1.1e-117 428.7 843 38.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.4e-117 428.3 900 36.8
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.1e-112 409.8 936 36.3
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.3e-109 399.8 634 40.7
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 6.5e-107 392.9 822 37.6
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.3e-102 376.3 850 36.2
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 3.2e-98 364.0 552 42.9
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 5.7e-95 353.2 507 45.4
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 3.7e-94 350.5 821 35.7
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-93 349.0 424 50.2
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.2e-90 337.0 436 49.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.1e-89 333.2 607 38.4
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 9.8e-87 325.9 922 32.4
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.0e-84 318.2 335 53.7
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.9e-84 316.6 927 31.9
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.6e-82 310.1 874 33.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.6e-81 307.4 814 32.3
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 5.0e-75 287.0 382 47.4
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 2.5e-74 284.6 287 55.1
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.9e-70 271.2 853 30.7
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 5.1e-59 233.8 449 40.3
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 6.6e-59 233.4 686 32.2
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.9e-53 215.3 278 48.9
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 1.4e-48 199.1 224 52.2
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.9e-46 191.4 292 45.9
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 2.4e-45 188.3 413 38.0
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.6e-41 174.5 606 26.7
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.8e-39 167.2 553 29.8
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 9.9e-39 166.4 107 67.3
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 7.4e-34 150.2 245 40.8
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 3.6e-33 147.9 322 36.3
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 2.1e-25 122.1 115 52.2
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 3.4e-23 114.8 104 60.6
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.2e-22 112.1 119 47.9
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-21 109.4 262 31.7
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.7e-19 100.5 216 32.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.4e-16 92.8 81 50.6
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-14 85.9 159 34.0
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-11 76.6 44 75.0
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.8e-11 75.9 78 44.9
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.7e-10 70.9 80 50.0
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 7.4e-10 70.5 128 33.6
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 3.7e-09 68.2 90 56.7
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 4.5e-07 61.2 92 37.0
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 5.0e-06 57.8 109 34.9
Medtr2g449940 Medicago truncatula HOM05D003655 ORTHO05D004065 6.5e-06 57.4 99 41.4
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 8.5e-06 57.0 112 33.0


User provided reference genes

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