Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.1e-234 816.2 412 100.0
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 3.0e-211 738.4 412 89.1
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 2.5e-210 735.3 412 88.8
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.1e-209 732.3 412 88.8
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.4e-208 729.6 412 87.9
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 4.6e-196 688.0 413 81.4
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.5e-194 682.9 412 79.9
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.3e-194 681.4 412 79.9
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 5.6e-194 681.0 411 81.0
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.3e-193 679.9 412 79.6
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.4e-192 676.4 412 79.1
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.1e-192 675.2 412 78.9
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.0e-192 674.9 412 79.1
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 4.4e-191 671.4 410 80.2
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 4.9e-190 667.9 411 78.3
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 8.4e-190 667.2 413 78.5
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 1.9e-189 666.0 412 79.6
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.4e-189 665.6 412 79.6
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 7.1e-189 664.1 412 77.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.2e-188 663.3 408 79.7
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.2e-188 663.3 413 78.5
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 3.5e-188 661.8 413 79.2
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.6e-188 661.4 412 78.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 4.6e-188 661.4 413 78.9
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.0e-187 660.2 412 77.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 2.3e-187 659.1 411 79.3
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 3.0e-187 658.7 414 79.2
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.0e-187 658.7 414 77.3
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.5e-186 656.4 414 77.1
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 1.5e-186 656.4 412 79.1
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.5e-186 655.6 412 77.2
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 3.3e-186 655.2 414 79.7
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.3e-186 655.2 412 77.2
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 4.3e-186 654.8 408 78.9
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.6e-185 652.9 412 77.7
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 4.8e-185 651.4 417 77.7
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 6.2e-185 651.0 408 78.2
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 8.1e-185 650.6 410 77.3
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.1e-184 650.2 412 77.4
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 3.1e-184 648.7 411 77.4
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 6.9e-184 647.5 416 78.6
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 6.9e-184 647.5 416 78.6
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 6.9e-184 647.5 413 77.5
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 3.4e-183 645.2 415 78.8
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 7.6e-183 644.0 413 76.8
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 9.9e-183 643.7 412 74.5
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 9.9e-183 643.7 412 77.7
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.3e-182 643.3 412 76.0
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.7e-182 642.9 415 77.8
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.7e-182 642.9 415 76.4
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.2e-182 642.5 416 76.2
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 2.9e-182 642.1 412 74.8
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 4.9e-182 641.3 415 77.8
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 1.1e-181 640.2 414 76.3
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.9e-181 639.4 412 74.8
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.9e-181 639.4 415 77.3
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 7.1e-181 637.5 410 74.9
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 4.6e-180 634.8 413 75.3
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 4.6e-180 634.8 412 75.7
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 5.1e-179 631.3 413 75.3
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 5.1e-179 631.3 413 75.3
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.1e-178 630.2 412 74.5
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.5e-178 629.8 414 74.9
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 1.9e-178 629.4 412 74.5
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 1.9e-178 629.4 408 75.2
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 1.9e-178 629.4 445 71.2
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 2.5e-178 629.0 413 74.6
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.7e-177 625.2 479 66.6
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.1e-176 623.6 412 73.5
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.1e-176 623.6 413 73.8
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.1e-176 623.6 414 73.9
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 5.3e-176 621.3 410 73.7
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 5.3e-176 621.3 414 73.2
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 6.9e-176 620.9 413 74.1
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 9.0e-176 620.5 413 74.3
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.2e-175 620.2 413 73.8
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.0e-175 619.4 412 73.5
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 4.5e-175 618.2 412 72.6
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 4.5e-175 618.2 412 73.3
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.3e-174 616.7 413 72.9
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 1.3e-174 616.7 413 72.9
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 1.3e-174 616.7 413 72.9
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 1.7e-174 616.3 414 72.9
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.4e-174 614.0 413 73.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.9e-173 612.8 376 78.7
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.5e-173 612.5 413 73.1
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.5e-173 612.5 409 73.8
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 4.2e-173 611.7 417 71.9
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 7.1e-173 610.9 413 73.1
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.1e-173 610.9 413 73.4
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 7.1e-173 610.9 413 71.9
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 2.1e-172 609.4 413 72.2
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.7e-172 609.0 413 73.1
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 3.5e-172 608.6 409 72.9
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 6.0e-172 607.8 413 71.9
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.9e-172 607.4 413 73.4
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-171 606.7 413 72.6
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.8e-171 606.3 413 73.4
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 3.0e-171 605.5 412 71.6
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 3.0e-171 605.5 455 66.6
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.9e-171 605.1 413 73.4
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.1e-171 604.7 412 71.1
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 5.1e-171 604.7 413 73.1
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.1e-169 599.4 413 71.4
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.1e-168 597.0 410 71.2
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 9.0e-168 594.0 508 62.2
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.0e-167 592.8 412 69.9
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 4.5e-167 591.7 417 69.5
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.0e-166 590.5 403 74.2
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 9.7e-162 573.9 417 67.4
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.2e-161 572.8 410 67.8
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 4.1e-160 568.5 420 69.5
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 7.2e-157 557.8 466 61.2
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.8e-155 553.1 428 65.0
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.5e-154 549.3 418 66.7
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 7.7e-151 537.7 350 75.1
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 1.3e-150 537.0 408 64.0
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.2e-143 513.8 306 80.4
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 7.2e-141 504.6 350 72.6
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 6.1e-140 501.5 408 60.3
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 4.0e-139 498.8 329 74.8
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.1e-138 497.3 410 58.0
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.8e-134 482.3 332 71.7
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 4.8e-129 465.3 419 58.2
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.8e-128 463.4 408 56.1
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 1.9e-125 453.4 417 57.1
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 9.4e-125 451.1 334 66.8
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 2.3e-123 446.4 417 56.4
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 8.6e-110 401.4 234 81.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 3.0e-102 376.3 243 73.7
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 6.6e-86 322.0 435 43.2
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.6e-79 300.8 181 79.6
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 5.3e-75 285.8 389 43.2
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 7.1e-72 275.4 237 61.6
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 9.9e-66 255.0 332 43.1
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.5e-56 222.6 182 63.2
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 2.5e-45 187.2 115 78.3
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.3e-44 184.9 256 46.5
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 2.7e-39 167.2 219 44.7
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 3.7e-36 156.8 125 60.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 8.5e-33 145.6 79 84.8
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 8.2e-28 129.0 86 67.4
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.2e-26 125.2 84 67.9
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 8.5e-25 119.0 183 43.2
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 6.7e-22 109.4 74 67.6
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 6.7e-22 109.4 74 67.6
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.3e-21 107.1 90 56.7
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 4.4e-21 106.7 74 66.2
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 7.5e-21 105.9 88 62.5
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 7.5e-21 105.9 88 62.5
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 3.1e-19 100.5 88 61.4
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.6e-18 98.2 82 57.3
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.5e-18 97.1 81 59.3
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.5e-16 91.7 73 61.6
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 4.2e-16 90.1 66 60.6
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.5e-13 81.6 65 55.4
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 2.6e-13 80.9 59 66.1
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 7.0e-11 72.8 115 40.9
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 9.1e-11 72.4 115 40.0
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 3.5e-10 70.5 86 45.3
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 1.4e-06 58.5 123 34.1


User provided reference genes

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