Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 0.0e+00 1303.5 649 100.0
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.3e-293 1012.7 648 78.7
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.2e-291 1006.1 640 78.9
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 4.2e-268 927.9 592 79.2
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 1.0e-221 773.9 658 61.2
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 8.2e-216 754.2 633 61.1
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.1e-207 727.2 656 58.1
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 1.1e-204 717.2 661 56.9
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.6e-203 713.4 644 58.4
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.3e-202 709.5 599 61.1
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 2.4e-199 699.5 651 56.4
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 2.2e-197 693.0 635 57.2
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.6e-195 686.8 636 56.9
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 6.3e-192 674.9 658 54.7
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 3.8e-189 665.6 602 59.0
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 8.6e-189 664.5 601 57.9
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 9.5e-188 661.0 619 56.4
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 2.8e-187 659.4 699 50.8
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.4e-186 657.1 656 52.9
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.3e-186 656.4 655 53.6
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 9.2e-183 644.4 657 53.9
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.0e-181 641.0 636 54.2
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 8.6e-181 637.9 651 53.6
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.5e-180 637.1 587 57.4
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.5e-180 637.1 662 52.7
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.9e-175 620.2 643 53.7
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 4.1e-175 619.0 694 49.3
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 4.1e-175 619.0 592 54.7
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.3e-173 613.2 582 55.8
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 3.6e-171 605.9 641 52.1
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.1e-170 604.4 644 49.2
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 3.1e-170 602.8 598 52.0
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 4.0e-170 602.4 631 51.7
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.2e-169 600.9 655 50.7
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 2.0e-169 600.1 593 54.1
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 3.4e-169 599.4 598 51.3
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 5.8e-169 598.6 598 51.5
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 5.8e-169 598.6 617 51.7
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 1.7e-168 597.0 606 51.5
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 2.2e-168 596.7 658 52.3
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 4.9e-168 595.5 597 50.9
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.4e-167 594.0 606 51.0
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 4.1e-167 592.4 591 52.8
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 7.8e-166 588.2 613 50.4
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 7.8e-166 588.2 674 47.9
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.0e-165 586.3 616 49.4
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 8.6e-165 584.7 659 48.6
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 1.9e-164 583.6 636 50.6
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 7.3e-164 581.6 612 50.2
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 2.1e-163 580.1 655 50.1
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 2.1e-163 580.1 603 52.9
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.8e-162 577.0 613 50.9
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 3.1e-162 576.2 742 45.0
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 3.1e-162 576.2 604 49.5
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 1.2e-161 574.3 614 50.5
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 1.2e-161 574.3 614 50.5
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.8e-161 572.0 659 49.6
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.7e-160 570.5 612 49.7
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 8.4e-160 568.2 613 49.9
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 4.6e-158 562.4 622 49.7
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.0e-157 561.2 643 49.0
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 1.3e-157 560.8 614 50.7
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 6.6e-157 558.5 614 50.2
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 1.5e-156 557.4 614 50.0
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 3.3e-156 556.2 620 46.9
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.2e-155 554.3 677 48.6
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 1.2e-155 554.3 614 49.8
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 4.7e-155 552.4 607 49.4
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.4e-154 550.8 629 47.9
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.4e-154 550.1 603 48.9
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 6.8e-154 548.5 643 47.1
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 5.8e-153 545.4 615 49.3
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 6.4e-152 542.0 614 47.7
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.0e-149 534.6 653 47.8
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 1.9e-148 530.4 599 48.9
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.5e-148 530.0 661 45.8
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.3e-147 527.7 681 43.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 1.3e-147 527.7 657 44.9
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 1.8e-146 523.9 551 50.1
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 3.1e-146 523.1 602 47.2
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 6.0e-142 508.8 606 45.4
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 8.1e-139 498.4 555 48.1
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 9.3e-135 485.0 564 50.0
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.6e-134 484.2 659 41.6
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 1.3e-133 481.1 536 48.1
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 3.3e-132 476.5 696 42.1
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 8.1e-131 471.9 610 43.9
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 1.5e-129 467.6 676 42.3
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 8.4e-128 461.8 681 39.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.3e-117 427.9 470 50.4
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.3e-117 427.9 651 39.2
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 3.3e-116 423.3 542 44.3
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 2.8e-115 420.2 455 50.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 7.7e-113 412.1 449 49.4
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 2.6e-108 397.1 443 49.7
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 2.8e-99 367.1 619 36.2
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.0e-85 322.0 441 42.6
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 5.7e-84 316.2 553 38.9
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 2.5e-63 247.7 335 42.7
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 2.7e-57 227.6 216 53.7
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 3.1e-53 214.2 188 55.9
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 9.8e-52 209.1 569 28.3
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 2.2e-43 181.4 563 27.7
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 1.2e-41 175.6 361 37.1
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 1.2e-38 165.6 624 22.9
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 1.6e-38 165.2 170 50.6
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.8e-37 161.8 463 28.3
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 3.8e-35 154.1 603 24.0
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 4.3e-31 140.6 145 46.2
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 4.3e-31 140.6 145 46.2
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 7.6e-28 129.8 234 34.2
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 1.6e-22 112.1 86 57.0
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 2.4e-18 98.2 102 46.1
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 7.4e-15 86.7 85 48.2
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 4.6e-09 67.4 71 50.7
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 6.0e-09 67.0 62 51.6
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 1.9e-07 62.0 85 37.6
arahy.Tifrunner.gnm1.ann1.BX8F04 Arachis hypogaea HOM05D000162 ORTHO05D000090 7.4e-07 60.1 76 36.8
Lsat_1_v5_gn_9_108561 Lactuca sativa HOM05D018531 ORTHO05D011576 7.4e-07 60.1 54 48.1
AagrBONN_evm.TU.Sc2ySwM_344.2025 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.3 322 23.3
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 1.6e-06 58.9 59 44.1
CAN.G1303.1 Capsicum annuum HOM05D000001 ORTHO05D000003 2.8e-06 58.2 315 23.2
Lsat_1_v5_gn_5_130920 Lactuca sativa HOM05D001159 ORTHO05D011576 2.8e-06 58.2 54 48.1
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 2.8e-06 58.2 54 48.1
Lsat_1_v5_gn_1_129260 Lactuca sativa HOM05D005833 ORTHO05D011576 3.7e-06 57.8 52 50.0
Medtr6g445300 Medicago truncatula HOM05D000162 ORTHO05D000090 3.7e-06 57.8 78 39.7
THA.LOC104823309 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 3.7e-06 57.8 138 27.5
Lsat_1_v5_gn_5_140921 Lactuca sativa HOM05D000200 ORTHO05D000262 4.8e-06 57.4 56 44.6
Lsat_1_v5_gn_5_86001 Lactuca sativa HOM05D005833 ORTHO05D011576 4.8e-06 57.4 54 48.1
AagrBONN_evm.TU.Sc2ySwM_228.4327 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.2e-06 56.6 347 19.9
Lsat_1_v5_gn_0_21360 Lactuca sativa HOM05D001049 ORTHO05D015148 8.2e-06 56.6 54 46.3
Lsat_1_v5_gn_2_68420 Lactuca sativa HOM05D005833 ORTHO05D011576 8.2e-06 56.6 54 48.1
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 8.2e-06 56.6 52 48.1
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 8.2e-06 56.6 54 48.1
Nitab4.5_0001739g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.2e-06 56.6 328 23.2
PGSC0003DMG400001184 Solanum tuberosum HOM05D000001 ORTHO05D000003 8.2e-06 56.6 328 22.6


User provided reference genes

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