Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 1.8e-142 509.2 257 100.0
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 5.5e-123 444.5 240 94.6
ClCG02G004370 Citrullus lanatus HOM05D004759 ORTHO05D005722 6.1e-122 441.0 257 86.8
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 6.3e-119 431.0 256 85.2
MELO3C013383.2 Cucumis melo HOM05D004759 ORTHO05D005722 5.9e-117 424.5 257 83.7
CsaV3_7G000740 Cucumis sativus L. HOM05D004759 ORTHO05D005722 1.2e-114 416.8 257 82.1
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 2.3e-100 369.4 257 70.8
FAN24G2027 Fragaria x ananassa HOM05D004759 ORTHO05D005722 2.5e-99 365.9 252 71.0
FvH4_2g02210 Fragaria vesca HOM05D004759 ORTHO05D005722 9.5e-99 364.0 252 70.6
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 9.5e-99 364.0 257 68.9
Atru.chr5.3204 Acer truncatum HOM05D004759 ORTHO05D005722 1.2e-98 363.6 258 68.6
FAN15G1889 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.6e-98 363.2 252 70.6
FAN20G1238 Fragaria x ananassa HOM05D004759 ORTHO05D005722 2.3e-97 359.4 251 70.5
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 4.0e-97 358.6 257 68.9
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 6.8e-97 357.8 257 68.5
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 8.9e-97 357.5 257 67.7
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 8.9e-97 357.5 254 67.3
FAN27G2697 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.2e-96 357.1 252 69.8
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 2.0e-96 356.3 256 66.8
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 5.7e-96 354.8 258 68.2
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 5.7e-96 354.8 254 66.5
RcHm_v2.0_Chr6g0245891 Rosa chinensis HOM05D004759 ORTHO05D005722 9.8e-96 354.0 252 69.0
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 1.3e-95 353.6 254 66.5
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 1.7e-95 353.2 257 69.6
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 2.2e-95 352.8 258 68.6
Potri.004G166900 Populus trichocarpa HOM05D004759 ORTHO05D005722 1.1e-94 350.5 258 68.2
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 1.1e-94 350.5 258 68.6
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 1.4e-94 350.1 255 67.1
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 1.8e-94 349.7 254 65.7
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 5.4e-94 348.2 260 66.9
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 1.6e-93 346.7 262 68.3
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 1.6e-93 346.7 257 68.1
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 2.7e-93 345.9 254 65.7
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 4.6e-93 345.1 252 68.7
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 4.6e-93 345.1 254 66.5
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 7.8e-93 344.4 254 67.3
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 7.8e-93 344.4 254 64.6
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 2.3e-92 342.8 259 68.0
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 3.0e-92 342.4 258 68.2
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 1.1e-91 340.5 258 65.5
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.5e-91 340.1 260 67.7
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 1.9e-91 339.7 252 65.9
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 2.5e-91 339.3 255 67.5
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 2.5e-91 339.3 256 65.2
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 3.3e-91 339.0 255 67.5
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 7.3e-91 337.8 260 67.7
Manes.11G078000 Manihot esculenta HOM05D004759 ORTHO05D005722 9.5e-91 337.4 252 67.9
TAR376G0227 Trochodendron aralioides HOM05D004759 ORTHO05D005722 2.8e-90 335.9 256 65.6
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 6.2e-90 334.7 254 67.7
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 6.2e-90 334.7 260 66.5
Duzib052G1250 Durio zibethinus HOM05D004759 ORTHO05D005722 8.0e-90 334.3 258 66.3
Glyma.06G005900 Glycine max HOM05D004759 ORTHO05D005722 4.0e-89 332.0 256 63.7
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 1.2e-88 330.5 257 65.4
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 1.5e-88 330.1 256 65.6
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 2.0e-88 329.7 254 65.0
Lj1g0004015 Lotus japonicus HOM05D004759 ORTHO05D005722 2.6e-88 329.3 256 62.9
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 3.4e-88 328.9 256 64.5
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 3.4e-88 328.9 253 66.4
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 4.4e-88 328.6 253 66.0
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 5.8e-88 328.2 254 64.2
TWI31G1308 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 5.8e-88 328.2 256 63.7
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 7.5e-88 327.8 257 65.0
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 7.5e-88 327.8 256 65.2
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 9.8e-88 327.4 256 63.3
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 9.8e-88 327.4 256 62.9
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 1.3e-87 327.0 256 64.1
Phvul.009G000900 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 1.7e-87 326.6 254 63.0
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 1.7e-87 326.6 256 63.7
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 2.9e-87 325.9 256 62.1
vmacro02240 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 3.7e-87 325.5 257 63.8
vmacro22691 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 3.7e-87 325.5 257 63.8
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 4.9e-87 325.1 256 64.1
Rhsim11G0187000 Rhododendron simsii HOM05D004759 ORTHO05D005722 4.9e-87 325.1 256 63.3
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 1.4e-86 323.6 253 64.8
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 1.4e-86 323.6 257 64.2
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 4.1e-86 322.0 254 64.6
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 4.1e-86 322.0 253 65.2
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 1.6e-85 320.1 252 65.5
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 2.0e-85 319.7 257 62.6
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 1.3e-84 317.0 248 63.3
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 3.9e-84 315.5 258 62.0
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 5.0e-84 315.1 256 62.5
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 4.7e-82 308.5 256 60.2
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 8.1e-82 307.8 261 58.6
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 4.0e-81 305.4 256 59.4
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 2.6e-80 302.8 253 59.7
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 3.4e-80 302.4 254 59.1
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 3.4e-80 302.4 256 58.6
Medtr3g117680 Medicago truncatula HOM05D004759 ORTHO05D005722 3.4e-80 302.4 257 58.8
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 4.4e-80 302.0 256 60.2
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 5.8e-80 301.6 253 60.5
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 7.5e-80 301.2 256 59.8
Ca_15318_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 7.5e-80 301.2 258 59.3
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 7.5e-80 301.2 255 59.2
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 9.8e-80 300.8 255 60.8
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 1.3e-79 300.4 253 58.9
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 1.3e-79 300.4 254 59.8
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 1.7e-79 300.1 252 57.9
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 4.9e-79 298.5 258 60.1
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 1.4e-78 297.0 255 60.0
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 3.2e-78 295.8 256 60.2
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 3.2e-78 295.8 256 60.2
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 5.4e-78 295.0 259 58.3
Psat5g003440 Pisum sativum HOM05D004759 ORTHO05D005722 5.4e-78 295.0 257 58.4
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.5e-77 292.4 259 57.5
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 4.6e-77 292.0 224 64.7
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 1.0e-76 290.8 257 59.5
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 1.3e-76 290.4 254 57.9
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 1.7e-76 290.0 259 59.5
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 1.7e-76 290.0 259 59.5
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 2.3e-76 289.7 252 63.5
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 5.6e-75 285.0 254 58.3
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 2.8e-74 282.7 262 55.7
arahy.Tifrunner.gnm1.ann1.ZR7FTB Arachis hypogaea HOM05D004759 ORTHO05D005722 3.1e-73 279.3 254 58.3
Oeu055645.1 Olea europaea HOM05D004759 ORTHO05D005722 3.4e-72 275.8 254 55.1
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 5.8e-72 275.0 246 56.1
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 5.8e-72 275.0 254 54.7
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 9.9e-72 274.2 253 54.9
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 2.9e-71 272.7 254 54.3
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 1.7e-68 263.5 268 53.0
Nn5g30165 Nelumbo nucifera HOM05D004759 ORTHO05D005722 2.3e-68 263.1 214 59.8
Nn1g05877 Nelumbo nucifera HOM05D004759 ORTHO05D005722 1.1e-67 260.8 252 56.0
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 1.1e-65 254.2 250 48.8
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 1.8e-65 253.4 281 49.1
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 8.4e-63 244.6 259 49.8
arahy.Tifrunner.gnm1.ann1.R4GM9V Arachis hypogaea HOM05D004759 ORTHO05D005722 4.2e-62 242.3 259 51.7
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 2.7e-61 239.6 253 50.6
Glyma.12G023500 Glycine max HOM05D004759 ORTHO05D005722 7.8e-61 238.0 183 67.2
arahy.Tifrunner.gnm1.ann1.T5CB16 Arachis hypogaea HOM05D004759 ORTHO05D005722 6.4e-55 218.4 186 61.3
Dinv41981 Davidia involucrata HOM05D004759 ORTHO05D005722 8.4e-55 218.0 151 69.5
HPP92_007135 Vanilla planifolia HOM05D004759 ORTHO05D005722 4.2e-54 215.7 248 46.8
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 3.0e-52 209.5 254 45.3
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 2.4e-49 199.9 248 43.5
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.2e-48 197.6 247 42.9
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 3.4e-48 196.1 254 46.5
unitig_21.g20808 Utricularia gibba HOM05D004759 ORTHO05D005722 6.9e-41 171.8 186 53.2
Cc02_g16650 Coffea canephora HOM05D004759 ORTHO05D005722 2.2e-39 166.8 155 57.4
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 3.2e-38 162.9 245 35.1
PSO675G1610 Papaver somniferum HOM05D004759 ORTHO05D005722 5.5e-38 162.2 259 39.8
PSO541G2336 Papaver somniferum HOM05D004759 ORTHO05D005722 6.0e-37 158.7 260 39.6
SEGI_21972 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.1e-35 154.5 256 33.2
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 1.7e-31 140.6 257 31.9
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 1.5e-24 117.5 138 44.9
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 4.5e-24 115.9 190 36.8
DCAR_026360 Daucus carota HOM05D004759 ORTHO05D005722 8.5e-23 111.7 90 61.1
unitig_21.g20809 Utricularia gibba HOM05D004759 ORTHO05D005722 1.4e-20 104.4 74 63.5
SEGI_16256 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.8e-20 104.0 185 34.6
Cpa.g.sc37.205 Carica papaya HOM05D004759 ORTHO05D005722 9.7e-19 98.2 184 38.0
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 8.5e-15 85.1 239 27.6
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 3.2e-14 83.2 236 29.2
Oeu046121.1 Olea europaea HOM05D004759 ORTHO05D005722 5.5e-14 82.4 64 64.1
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 3.9e-12 76.3 236 26.7
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 8.8e-12 75.1 236 26.7
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 1.5e-11 74.3 239 27.6
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 5.7e-11 72.4 240 26.7
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 5.7e-11 72.4 237 25.7
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 1.3e-10 71.2 236 25.4
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 2.8e-10 70.1 237 25.7
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 4.8e-10 69.3 236 25.4
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 8.2e-10 68.6 249 26.5
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 8.2e-10 68.6 247 26.3
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 8.2e-10 68.6 247 26.3
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 1.8e-09 67.4 239 27.2
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 3.1e-09 66.6 241 26.6
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 4.1e-09 66.2 244 26.2
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 4.1e-09 66.2 244 26.2
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 5.3e-09 65.9 247 25.5
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 1.2e-08 64.7 238 26.9
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 2.0e-08 63.9 237 25.3
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 2.6e-08 63.5 238 24.4
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 5.9e-08 62.4 241 24.9
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 7.7e-08 62.0 242 24.8
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 2.2e-07 60.5 237 25.7


User provided reference genes

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