Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015183 Sechium edule HOM05D004127 ORTHO05D005119 1.5e-142 510.8 626 100.0
ClCG09G004980 Citrullus lanatus HOM05D004127 ORTHO05D005119 3.1e-103 380.2 652 87.1
MELO3C015913.2 Cucumis melo HOM05D004127 ORTHO05D005119 5.0e-101 372.9 645 87.0
Sed0018206 Sechium edule HOM05D004127 ORTHO05D005119 4.6e-99 366.3 651 86.3
CsaV3_7G030080 Cucumis sativus L. HOM05D004127 ORTHO05D005119 6.1e-99 365.9 648 86.6
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 8.3e-64 249.2 315 67.6
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 1.1e-63 248.8 213 61.5
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 2.9e-61 240.7 314 65.9
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.3e-60 237.3 313 68.1
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 5.6e-60 236.5 316 67.7
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 5.6e-60 236.5 323 66.6
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 7.3e-60 236.1 312 68.3
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 7.3e-60 236.1 313 68.4
Ciclev10018807m.g Citrus clementina HOM05D004127 ORTHO05D005119 1.6e-59 235.0 321 66.7
Cpa.g.sc18.78 Carica papaya HOM05D004127 ORTHO05D005119 2.8e-59 234.2 669 72.2
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 3.0e-58 230.7 312 67.0
QL12p019388 Quercus lobata HOM05D004127 ORTHO05D005119 3.0e-58 230.7 317 68.1
Cfa005772 Carpinus fangiana HOM05D004127 ORTHO05D005119 4.0e-58 230.3 336 64.9
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 4.0e-58 230.3 324 65.7
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 1.5e-57 228.4 314 65.6
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 2.6e-57 227.6 228 54.8
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 2.6e-57 227.6 231 53.7
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 3.4e-57 227.3 319 68.0
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 4.4e-57 226.9 322 68.0
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 7.5e-57 226.1 313 63.9
TWI75G0020 Tripterygium wilfordii HOM05D004127 ORTHO05D005119 9.8e-57 225.7 228 56.6
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.3e-56 225.3 325 67.7
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 1.3e-56 225.3 325 67.7
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 1.3e-56 225.3 320 65.0
Haze_05068 Corylus avellana HOM05D004127 ORTHO05D005119 2.9e-56 224.2 340 64.1
Duzib138G0806 Durio zibethinus HOM05D004127 ORTHO05D005119 3.7e-56 223.8 317 67.5
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 4.1e-55 220.3 321 67.9
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 5.4e-55 219.9 324 59.0
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 3.5e-54 217.2 242 50.8
Dinv10119 Davidia involucrata HOM05D004127 ORTHO05D005119 4.6e-54 216.9 232 51.7
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 6.0e-54 216.5 321 62.6
Nn4g25565 Nelumbo nucifera HOM05D004127 ORTHO05D005119 2.3e-53 214.5 224 53.6
Nn3g21732 Nelumbo nucifera HOM05D004127 ORTHO05D005119 1.9e-52 211.5 219 53.9
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 1.9e-52 211.5 316 62.7
TAR362G1247 Trochodendron aralioides HOM05D004127 ORTHO05D005119 2.8e-51 207.6 204 54.4
Actinidia17915 Actinidia chinensis HOM05D004127 ORTHO05D005119 3.6e-51 207.2 222 52.3
Gohir.A11G108300 Gossypium hirsutum HOM05D004127 ORTHO05D005119 1.4e-50 205.3 311 66.6
CiPaw.08G088200 Carya illinoinensis HOM05D004127 ORTHO05D005119 3.1e-50 204.1 228 52.6
Gohir.D11G112800 Gossypium hirsutum HOM05D004127 ORTHO05D005119 4.0e-50 203.8 311 66.6
TAR633G0666 Trochodendron aralioides HOM05D004127 ORTHO05D005119 8.9e-50 202.6 311 65.6
Nitab4.5_0000363g0190 Nicotiana tabacum HOM05D004127 ORTHO05D005119 1.5e-49 201.8 216 54.6
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 4.4e-49 200.3 230 50.0
Gorai.007G121300 Gossypium raimondii HOM05D004127 ORTHO05D005119 5.8e-49 199.9 311 66.2
Sopen06g004180 Solanum pennellii HOM05D004127 ORTHO05D005119 5.8e-49 199.9 208 53.8
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 9.8e-49 199.1 156 63.5
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 1.7e-48 198.4 236 50.0
Sc24g0004200 Simmondsia chinensis HOM05D004127 ORTHO05D005119 2.9e-48 197.6 209 53.6
Actinidia25862 Actinidia chinensis HOM05D004127 ORTHO05D005119 3.7e-48 197.2 165 58.8
CiPaw.07G119200 Carya illinoinensis HOM05D004127 ORTHO05D005119 4.9e-48 196.8 331 61.3
Hund09649 Selenicereus undatus HOM05D004127 ORTHO05D005119 1.1e-47 195.7 214 52.3
SalBow3G1425 Salvia bowleyana HOM05D004127 ORTHO05D005119 4.1e-47 193.7 221 52.0
Lsat_1_v5_gn_9_4701 Lactuca sativa HOM05D004127 ORTHO05D005119 7.0e-47 193.0 228 50.4
Nitab4.5_0007407g0040 Nicotiana tabacum HOM05D004127 ORTHO05D005119 7.0e-47 193.0 215 51.6
Oeu058159.1 Olea europaea HOM05D004127 ORTHO05D005119 7.0e-47 193.0 220 51.4
Thhalv10016252m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 1.6e-46 191.8 222 50.9
HanXRQChr10g0285041 Helianthus annuus HOM05D004127 ORTHO05D005119 1.6e-46 191.8 221 52.0
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 3.5e-46 190.7 245 46.9
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 1.0e-45 189.1 228 48.2
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 1.7e-45 188.3 234 48.3
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 3.0e-45 187.6 228 49.1
AL4G26650 Arabidopsis lyrata HOM05D004127 ORTHO05D005119 3.0e-45 187.6 201 52.2
Carub.0004s1272 Capsella rubella HOM05D004127 ORTHO05D005119 3.9e-45 187.2 167 57.5
PSO170G0800 Papaver somniferum HOM05D004127 ORTHO05D005119 6.6e-45 186.4 221 49.8
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 1.1e-44 185.7 161 59.0
Migut.D00068 Erythranthe guttata HOM05D004127 ORTHO05D005119 2.5e-44 184.5 220 48.6
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 2.5e-44 184.5 223 49.8
Peaxi162Scf00058g02410 Petunia axillaris HOM05D004127 ORTHO05D005119 2.5e-44 184.5 219 50.7
BcaC02g07981 Brassica carinata HOM05D004127 ORTHO05D005119 5.6e-44 183.3 223 49.3
C04p61120 Brassica napus HOM05D004127 ORTHO05D005119 5.6e-44 183.3 223 49.3
BcaB06g28547 Brassica carinata HOM05D004127 ORTHO05D005119 7.3e-44 183.0 218 49.1
Sp4g13890 Schrenkiella parvula HOM05D004127 ORTHO05D005119 1.6e-43 181.8 222 47.7
SGA_v2.0_scaffold334G49080 Striga asiatica HOM05D004127 ORTHO05D005119 2.8e-43 181.0 140 64.3
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 3.6e-43 180.6 229 47.2
AT2G31400 Arabidopsis thaliana HOM05D004127 ORTHO05D005119 8.1e-43 179.5 198 51.0
CARHR125030 Cardamine hirsuta HOM05D004127 ORTHO05D005119 1.1e-42 179.1 199 50.3
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 1.4e-42 178.7 225 47.6
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 1.8e-42 178.3 153 58.8
Ah.02g112420 Amaranthus hybridus HOM05D004127 ORTHO05D005119 2.3e-42 177.9 217 47.5
A04p24290 Brassica napus HOM05D004127 ORTHO05D005119 3.1e-42 177.6 222 47.7
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 1.2e-41 175.6 152 60.5
Eucgr.H00998 Eucalyptus grandis HOM05D004127 ORTHO05D005119 1.2e-41 175.6 125 64.0
BolC4t27597H Brassica oleracea HOM05D004127 ORTHO05D005119 2.6e-41 174.5 214 48.6
BraA05t20351Z Brassica rapa HOM05D004127 ORTHO05D005119 2.6e-41 174.5 220 50.5
Thhalv10016219m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 4.4e-41 173.7 308 62.0
C04p18930 Brassica napus HOM05D004127 ORTHO05D005119 9.9e-41 172.6 219 50.2
BolC4t23423H Brassica oleracea HOM05D004127 ORTHO05D005119 9.9e-41 172.6 219 50.2
BcaC02g11240 Brassica carinata HOM05D004127 ORTHO05D005119 2.9e-40 171.0 218 49.1
AUR62011779 Chenopodium quinoa HOM05D004127 ORTHO05D005119 1.4e-39 168.7 218 49.5
BcaB02g10389 Brassica carinata HOM05D004127 ORTHO05D005119 2.4e-39 167.9 219 46.6
AUR62024623 Chenopodium quinoa HOM05D004127 ORTHO05D005119 3.2e-39 167.5 218 49.1
A05p14200 Brassica napus HOM05D004127 ORTHO05D005119 2.7e-38 164.5 220 48.2
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 3.9e-37 160.6 213 48.8
DCAR_012332 Daucus carota HOM05D004127 ORTHO05D005119 2.8e-35 154.5 125 59.2
PGSC0003DMG402007298 Solanum tuberosum HOM05D004127 ORTHO05D005119 1.5e-33 148.7 125 60.8
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 1.3e-32 145.6 192 47.9
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 2.9e-32 144.4 268 36.2
BraA04t17948Z Brassica rapa HOM05D004127 ORTHO05D005119 4.9e-32 143.7 126 58.7
Solyc06g009520.3 Solanum lycopersicum HOM05D004127 ORTHO05D005119 1.1e-31 142.5 125 57.6
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 1.2e-30 139.0 127 54.3
Atru.BG.78.p Acer truncatum HOM05D004127 ORTHO05D005119 7.8e-30 136.3 87 74.7
GSVIVG01028141001 Vitis vinifera HOM05D004127 ORTHO05D005119 7.8e-30 136.3 163 48.5
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 1.5e-28 132.1 145 46.9
vmacro23006 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 5.6e-28 130.2 114 56.1
SEGI_11136 Sequoiadendron giganteum HOM05D004127 ORTHO05D005119 4.0e-26 124.0 214 39.3
Oeu044735.1 Olea europaea HOM05D004127 ORTHO05D005119 1.5e-25 122.1 204 42.2
Medtr7g017570 Medicago truncatula HOM05D004127 ORTHO05D005119 5.8e-25 120.2 146 42.5
Medtr7g017530 Medicago truncatula HOM05D004127 ORTHO05D005119 1.3e-24 119.0 146 42.5
CAN.G1280.36 Capsicum annuum HOM05D004127 ORTHO05D005119 1.7e-24 118.6 115 52.2
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 1.7e-24 118.6 146 41.1
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 4.2e-23 114.0 146 43.2
Psat0s287g0280 Pisum sativum HOM05D004127 ORTHO05D005119 2.1e-22 111.7 145 40.0
Lalb_Chr10g0092591 Lupinus albus HOM05D004127 ORTHO05D005119 2.3e-21 108.2 142 42.3
arahy.Tifrunner.gnm1.ann1.1I1C4M Arachis hypogaea HOM05D004127 ORTHO05D005119 3.9e-21 107.5 150 40.7
arahy.Tifrunner.gnm1.ann1.X62M7H Arachis hypogaea HOM05D004127 ORTHO05D005119 3.9e-21 107.5 150 40.7
VMungo1383G2579 Vigna mungo HOM05D004127 ORTHO05D005119 8.7e-21 106.3 146 41.1
Pp3c5_16950 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.1e-20 105.9 164 41.5
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 3.3e-20 104.4 146 41.1
Actinidia20981 Actinidia chinensis HOM05D004127 ORTHO05D005119 4.3e-20 104.0 72 70.8
Phvul.008G024400 Phaseolus vulgaris HOM05D004127 ORTHO05D005119 4.3e-20 104.0 146 40.4
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 5.6e-20 103.6 143 43.4
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 1.3e-19 102.4 153 45.1
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 2.1e-19 101.7 146 39.7
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 4.8e-19 100.5 142 43.0
Actinidia21391 Actinidia chinensis HOM05D004127 ORTHO05D005119 4.0e-18 97.4 149 40.9
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 6.4e-16 90.1 140 42.1
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 2.1e-14 85.1 226 30.5
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 1.8e-13 82.0 144 33.3
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.1e-12 79.3 223 29.6
CSS0036979 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 3.3e-12 77.8 99 41.4
BolC4t23421H Brassica oleracea HOM05D004127 ORTHO05D005119 1.4e-10 72.4 51 70.6
Prupe.3G009900 Prunus persica HOM05D004127 ORTHO05D005119 1.8e-10 72.0 128 38.3
Oeu048867.1 Olea europaea HOM05D004127 ORTHO05D005119 1.5e-09 68.9 58 55.2
MD17G1277600 Malus domestica HOM05D004127 ORTHO05D005119 2.6e-09 68.2 54 63.0
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 5.8e-09 67.0 127 36.2
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 1.3e-08 65.9 100 44.0
Medtr6g016955 Medicago truncatula HOM05D004127 ORTHO05D005119 6.4e-08 63.5 68 48.5
Psat4g056960 Pisum sativum HOM05D004127 ORTHO05D005119 7.1e-07 60.1 57 50.9


User provided reference genes

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