Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 0.0e+00 1309.7 641 100.0
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 0.0e+00 1201.4 650 90.6
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 0.0e+00 1177.2 650 89.1
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 0.0e+00 1166.4 650 88.6
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.3e-311 1072.4 587 89.4
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 1.4e-295 1019.2 649 78.3
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.8e-295 1018.8 659 77.2
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 5.1e-295 1017.3 661 76.6
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 8.8e-295 1016.5 649 78.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 7.4e-294 1013.4 659 76.8
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 9.7e-294 1013.1 603 81.6
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 2.2e-293 1011.9 585 83.4
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.8e-293 1010.7 604 80.8
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 4.5e-291 1004.2 623 79.5
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.3e-290 1002.7 596 81.5
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.7e-290 1002.3 586 82.6
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-290 1001.9 648 76.5
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.4e-289 999.2 648 76.1
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.4e-289 999.2 648 75.9
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 3.2e-289 998.0 654 75.1
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 3.2e-289 998.0 652 75.6
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 4.2e-289 997.7 588 81.5
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 7.2e-289 996.9 655 76.5
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.7e-288 995.0 654 75.7
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 3.6e-288 994.6 653 75.3
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 4.7e-288 994.2 604 79.0
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.7e-288 994.2 602 79.6
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 7.9e-288 993.4 577 81.6
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 7.9e-288 993.4 634 76.7
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 1.8e-287 992.3 652 75.5
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.0e-286 988.8 599 78.5
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 4.8e-285 984.2 591 80.5
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.8e-285 984.2 710 71.7
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.4e-284 982.6 582 80.8
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.8e-284 982.2 602 79.2
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 9.1e-284 979.9 595 79.2
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 2.0e-283 978.8 611 76.9
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 2.6e-283 978.4 584 80.3
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.7e-282 975.7 626 76.4
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 2.2e-282 975.3 643 74.8
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 6.5e-282 973.8 624 76.0
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.5e-281 972.6 645 75.3
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 5.5e-281 970.7 593 79.3
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 7.2e-281 970.3 607 76.8
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 9.4e-281 969.9 639 74.3
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 1.6e-280 969.1 639 75.4
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 2.1e-280 968.8 588 78.7
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 6.1e-280 967.2 605 76.9
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 6.1e-280 967.2 608 77.6
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 8.0e-280 966.8 578 79.8
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.0e-279 966.5 613 76.0
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 2.3e-279 965.3 577 80.4
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 4.0e-279 964.5 602 76.4
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 4.0e-279 964.5 599 77.3
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 6.7e-279 963.8 642 75.2
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.5e-278 962.6 588 77.4
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.0e-278 962.2 582 79.0
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.6e-278 961.8 585 77.9
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 3.3e-278 961.4 609 76.5
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 3.3e-278 961.4 591 78.7
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 4.4e-278 961.1 632 74.2
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 5.7e-278 960.7 584 79.3
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 5.7e-278 960.7 579 79.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 7.5e-278 960.3 582 79.2
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 7.5e-278 960.3 625 75.2
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 9.7e-278 959.9 588 77.6
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 9.7e-278 959.9 588 77.2
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 9.7e-278 959.9 613 75.5
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.7e-277 959.1 595 77.6
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 2.2e-277 958.7 578 79.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.8e-277 958.4 634 74.8
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.8e-276 955.7 582 78.9
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 4.1e-276 954.5 589 77.6
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 4.1e-276 954.5 587 79.2
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 7.0e-276 953.7 589 77.8
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 7.0e-276 953.7 577 78.9
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 1.6e-275 952.6 595 76.5
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 1.6e-275 952.6 585 77.9
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 2.7e-275 951.8 585 77.9
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.7e-275 951.8 582 78.5
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 7.7e-275 950.3 588 77.2
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 2.2e-274 948.7 548 81.0
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.1e-273 946.4 586 77.3
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.5e-273 946.0 584 76.9
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.5e-273 946.0 588 77.6
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 1.9e-273 945.7 641 73.3
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 7.2e-273 943.7 553 81.0
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.2e-272 943.0 586 77.3
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 3.6e-272 941.4 571 78.8
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 6.1e-272 940.6 645 73.8
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 1.4e-271 939.5 573 77.8
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.8e-271 939.1 598 75.6
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.3e-269 932.9 598 75.4
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 2.2e-269 932.2 607 74.5
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-268 929.1 629 73.8
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.8e-268 929.1 528 82.8
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 3.1e-268 928.3 546 80.0
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 2.7e-267 925.2 560 78.0
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 4.5e-267 924.5 582 76.3
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 2.3e-266 922.2 531 81.7
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 2.1e-264 915.6 683 67.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 2.0e-262 909.1 592 74.7
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.7e-261 906.0 591 73.1
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 2.8e-261 905.2 616 72.4
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 4.9e-261 904.4 580 75.7
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 8.3e-261 903.7 580 75.5
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 6.1e-256 887.5 558 76.0
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 1.4e-255 886.3 532 78.2
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.4e-255 886.3 570 75.4
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.0e-250 870.2 615 70.2
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 9.8e-246 853.6 551 73.0
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.7e-245 852.8 589 72.8
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.0e-242 841.3 577 71.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 2.2e-237 825.9 565 72.2
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 1.6e-235 819.7 531 75.0
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.6e-232 809.7 448 84.8
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.1e-231 807.0 584 66.1
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 8.9e-231 803.9 448 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 8.4e-229 797.3 549 68.9
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.1e-227 792.7 439 85.0
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 3.5e-227 792.0 537 72.4
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 6.2e-224 781.2 558 66.8
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.1e-207 727.2 517 68.5
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.7e-194 681.4 494 69.0
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.9e-191 671.4 450 70.9
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.2e-182 644.0 538 59.1
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.7e-173 613.6 361 81.2
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 8.2e-168 594.7 344 82.3
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.6e-158 563.9 586 53.4
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.4e-146 524.2 278 88.1
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.2e-145 521.2 366 71.9
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 7.0e-143 511.9 561 48.0
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 4.5e-142 509.2 280 85.0
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 3.4e-137 493.0 554 51.6
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 9.8e-137 491.5 417 61.2
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 7.3e-124 448.7 305 72.5
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 8.6e-117 425.2 574 43.4
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 5.4e-111 406.0 287 67.9
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 2.2e-96 357.5 645 36.0
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 6.4e-88 329.3 184 83.2
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 1.4e-87 328.2 263 65.4
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 6.7e-85 319.3 179 83.8
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 7.4e-84 315.8 188 78.2
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.8e-83 313.2 179 82.7
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 2.2e-80 304.3 588 35.2
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 9.3e-79 298.9 167 83.2
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 1.9e-76 291.2 611 33.4
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.7e-75 287.0 587 33.7
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.8e-66 258.1 321 47.0
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 6.5e-64 249.6 609 32.2
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 2.3e-61 241.1 168 69.6
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.5e-60 238.4 140 80.7
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.7e-59 233.8 591 30.6
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 5.3e-50 203.4 122 81.1
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.6e-44 184.5 117 75.2
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.8e-43 181.0 98 85.7
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 3.7e-43 180.6 107 79.4
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 2.2e-40 171.4 155 58.7
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.3e-35 153.3 131 58.8
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.8e-29 135.2 67 91.0
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 2.3e-29 134.8 77 77.9
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 5.2e-29 133.7 139 51.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 7.5e-28 129.8 64 93.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.7e-27 128.6 118 56.8
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 2.0e-25 121.7 102 60.8
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 8.0e-22 109.8 63 79.4
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 6.8e-13 80.1 73 60.3
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 4.9e-11 73.9 78 53.8
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.9e-10 72.0 54 64.8
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.2e-09 69.3 73 47.9
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.6e-09 67.4 69 53.6
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 6.2e-06 57.0 38 63.2


User provided reference genes

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