Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 6.0e-138 494.2 252 100.0
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 7.5e-125 450.7 252 90.9
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 2.9e-116 422.2 252 86.9
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 2.7e-106 389.0 252 80.6
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.3e-105 386.7 252 79.8
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 7.3e-104 380.9 253 76.7
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 2.1e-103 379.4 251 78.1
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 4.8e-103 378.3 251 78.1
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 6.2e-103 377.9 251 76.9
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 8.1e-103 377.5 258 74.8
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 8.1e-103 377.5 252 79.4
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 1.1e-102 377.1 253 77.5
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 1.4e-102 376.7 251 76.1
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 5.3e-102 374.8 249 77.1
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 6.9e-102 374.4 252 75.4
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 9.0e-102 374.0 254 78.0
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 1.5e-101 373.2 252 74.6
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 4.5e-101 371.7 249 73.5
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 5.8e-101 371.3 248 74.6
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 7.6e-101 370.9 252 74.2
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 9.9e-101 370.5 254 75.6
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 9.9e-101 370.5 253 75.1
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 1.3e-100 370.2 253 75.1
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 1.7e-100 369.8 257 74.7
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 2.2e-100 369.4 251 74.5
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 2.2e-100 369.4 252 73.8
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 2.9e-100 369.0 248 73.4
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 3.8e-100 368.6 254 74.0
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 3.8e-100 368.6 254 74.0
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 3.8e-100 368.6 252 73.8
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 3.8e-100 368.6 249 73.5
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 6.4e-100 367.9 258 74.4
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 6.4e-100 367.9 249 73.5
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 2.4e-99 365.9 258 73.3
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 4.2e-99 365.2 252 73.0
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 4.2e-99 365.2 267 71.5
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 5.4e-99 364.8 271 70.5
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 7.1e-99 364.4 250 74.4
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 9.3e-99 364.0 249 73.5
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 1.6e-98 363.2 250 73.6
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 2.1e-98 362.8 249 74.3
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.1e-98 362.8 249 75.1
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 2.7e-98 362.5 251 74.5
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 2.7e-98 362.5 252 72.2
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 6.0e-98 361.3 253 73.9
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 1.8e-97 359.8 254 72.0
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 1.8e-97 359.8 248 74.2
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 2.3e-97 359.4 252 72.6
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 3.0e-97 359.0 252 71.4
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 3.9e-97 358.6 249 73.9
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 3.9e-97 358.6 248 73.0
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.9e-97 358.6 253 73.5
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 3.9e-97 358.6 249 74.3
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 5.1e-97 358.2 249 72.7
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 5.1e-97 358.2 249 72.7
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 6.7e-97 357.8 252 71.0
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 6.7e-97 357.8 252 71.0
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 8.7e-97 357.5 252 72.2
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 2.5e-96 355.9 251 73.3
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 5.6e-96 354.8 247 72.1
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 5.6e-96 354.8 251 73.3
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 1.3e-95 353.6 270 70.7
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 2.8e-95 352.4 272 67.3
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 8.1e-95 350.9 251 73.3
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 8.1e-95 350.9 251 71.3
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 1.1e-94 350.5 248 71.0
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 1.4e-94 350.1 254 70.5
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.8e-94 349.7 253 72.7
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 6.9e-94 347.8 249 69.9
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 9.0e-94 347.4 255 71.0
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.2e-93 347.1 248 70.2
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.5e-93 346.7 248 71.0
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 2.0e-93 346.3 235 74.5
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 3.4e-93 345.5 248 69.8
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 4.5e-93 345.1 248 70.2
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 4.5e-93 345.1 250 71.2
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 5.8e-93 344.7 249 71.9
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 2.2e-92 342.8 303 64.0
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 8.4e-92 340.9 236 73.3
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 2.5e-91 339.3 250 68.4
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 3.2e-91 339.0 248 69.8
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 5.5e-91 338.2 254 69.3
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 9.3e-91 337.4 249 68.7
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 9.3e-91 337.4 251 66.9
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 1.2e-90 337.0 249 67.5
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 7.9e-90 334.3 248 68.5
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 8.7e-89 330.9 264 65.5
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 2.5e-88 329.3 249 67.5
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 2.1e-87 326.2 257 65.8
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.4e-86 322.8 235 70.2
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.0e-86 322.0 257 63.8
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 2.0e-85 319.7 238 71.0
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 4.5e-85 318.5 238 67.6
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 2.9e-84 315.8 250 64.0
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 8.4e-84 314.3 251 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 1.9e-83 313.2 248 64.9
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 9.3e-83 310.8 248 64.5
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 6.0e-82 308.1 237 67.5
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 9.7e-80 300.8 251 62.9
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 5.9e-77 291.6 250 61.6
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.9e-77 291.6 253 60.9
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 9.4e-75 284.3 250 60.4
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 3.6e-74 282.3 198 70.2
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 3.6e-74 282.3 177 79.1
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 1.8e-73 280.0 232 65.5
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 2.3e-73 279.6 202 70.8
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 5.1e-73 278.5 206 67.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.1e-73 278.5 168 81.0
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 2.5e-72 276.2 252 61.1
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 3.2e-67 259.2 244 55.7
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 7.2e-67 258.1 176 75.0
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.1e-66 256.5 191 68.1
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 1.7e-63 246.9 183 71.0
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 7.0e-62 241.5 245 53.5
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 1.0e-60 237.7 252 51.2
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 5.2e-57 225.3 252 52.4
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 1.1e-56 224.2 216 56.9
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 3.7e-55 219.2 254 50.0
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 8.5e-52 208.0 167 63.5
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 3.2e-51 206.1 113 88.5
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 2.5e-43 179.9 138 70.3
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.5e-43 178.7 101 81.2
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 7.2e-43 178.3 138 69.6
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 4.0e-41 172.6 146 62.3
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.5e-40 170.6 267 39.3
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.5e-27 126.7 83 72.3
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 2.1e-26 123.6 67 82.1
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 2.2e-23 113.6 117 50.4
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 9.2e-22 108.2 57 84.2
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 4.6e-21 105.9 75 77.3
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 8.6e-20 101.7 70 68.6
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 8.9e-17 91.7 70 65.7
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 2.6e-16 90.1 68 64.7
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 3.7e-15 86.3 93 50.5
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 7.1e-14 82.0 69 60.9
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-10 68.6 58 67.2
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 2.0e-08 63.9 37 75.7
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.2e-07 60.5 71 49.3
PRCOL_00006457 Prasinoderma coloniale HOM05D005643 ORTHO05D006819 8.3e-07 58.5 144 32.6
CAN.G129.52 Capsicum annuum HOM05D001089 ORTHO05D000920 3.2e-06 56.6 42 64.3


User provided reference genes

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