Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.0e-181 639.0 342 100.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 8.9e-153 543.9 338 87.9
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.3e-151 540.0 342 85.7
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.2e-149 533.5 342 85.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 2.1e-141 506.1 342 82.5
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.2e-112 410.6 349 65.0
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.2e-109 400.6 252 78.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.6e-109 400.2 332 66.3
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.6e-109 400.2 262 76.0
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 4.6e-109 398.7 326 67.8
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 6.0e-109 398.3 324 67.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 6.0e-109 398.3 258 78.3
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 6.0e-109 398.3 331 64.4
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.3e-108 397.1 261 75.5
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.8e-108 396.7 310 67.1
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.3e-108 396.4 321 67.3
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.5e-107 393.7 349 62.8
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.9e-107 393.3 315 67.0
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.5e-107 392.9 286 71.7
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 7.4e-107 391.3 335 65.1
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 9.6e-107 391.0 354 61.6
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 9.6e-107 391.0 250 75.2
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.3e-106 390.6 283 71.4
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.1e-106 389.8 316 66.8
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 2.1e-106 389.8 311 67.8
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.7e-106 389.0 289 70.6
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 8.2e-106 387.9 257 76.7
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 8.2e-106 387.9 257 76.7
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 8.2e-106 387.9 313 65.2
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.1e-105 387.5 262 74.4
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.1e-105 387.5 255 75.7
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.8e-105 386.7 256 73.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.4e-105 386.3 262 74.4
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 3.1e-105 386.0 360 61.4
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.1e-105 386.0 342 64.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 3.1e-105 386.0 299 66.2
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 4.0e-105 385.6 252 75.4
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 5.3e-105 385.2 335 64.2
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 5.3e-105 385.2 298 70.1
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 6.9e-105 384.8 253 75.5
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 9.0e-105 384.4 251 75.3
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.2e-104 384.0 255 75.3
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.5e-104 383.6 258 76.0
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 2.6e-104 382.9 259 72.2
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 3.4e-104 382.5 260 74.2
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 4.5e-104 382.1 253 75.1
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 5.8e-104 381.7 334 63.5
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.8e-104 381.7 255 75.7
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 7.6e-104 381.3 331 64.4
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.0e-103 380.9 265 74.3
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.7e-103 380.2 343 63.3
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 1.7e-103 380.2 297 67.3
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.9e-103 379.4 256 75.4
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.9e-103 379.4 257 74.3
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 6.5e-103 378.3 341 63.0
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.9e-102 376.7 336 61.9
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.5e-102 376.3 314 65.0
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 2.5e-102 376.3 256 73.4
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 7.1e-102 374.8 333 62.5
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.2e-101 374.0 344 61.3
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 2.1e-101 373.2 254 72.8
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.7e-101 372.9 257 73.9
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.5e-101 372.5 249 74.7
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.5e-101 372.5 308 64.6
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 1.0e-100 370.9 313 64.2
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.8e-100 370.2 270 69.6
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 8.7e-100 367.9 247 71.3
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.9e-99 366.7 256 71.5
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.7e-99 365.2 328 60.4
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 4.8e-98 362.1 323 61.9
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.1e-97 360.9 335 60.0
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 6.9e-97 358.2 259 70.7
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 3.4e-96 355.9 308 63.0
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 5.9e-96 355.1 330 60.3
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 7.6e-96 354.8 288 62.8
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.0e-95 354.4 277 67.1
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.3e-95 354.0 261 67.8
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.7e-95 353.6 282 64.9
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 3.8e-95 352.4 325 59.1
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 8.5e-95 351.3 253 68.8
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.4e-94 350.5 319 60.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 2.5e-94 349.7 352 59.1
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.5e-94 349.7 314 60.8
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 4.2e-94 349.0 252 69.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 5.5e-94 348.6 280 64.6
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 7.2e-94 348.2 327 60.6
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.2e-93 347.4 279 65.6
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.7e-93 346.3 322 58.7
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.1e-93 345.1 341 57.8
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 3.9e-92 342.4 342 56.7
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 5.1e-92 342.0 338 57.1
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 5.1e-92 342.0 338 57.1
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 6.3e-82 308.5 329 53.5
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.1e-81 307.8 335 52.5
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 4.1e-81 305.8 280 62.5
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 5.3e-81 305.4 346 50.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.2e-80 304.3 335 51.6
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.3e-79 300.8 335 51.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 3.2e-78 296.2 202 73.8
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.0e-75 287.0 294 54.8
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 8.2e-74 281.6 271 57.9
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 7.7e-72 275.0 324 47.8
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 2.9e-71 273.1 267 54.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 4.0e-68 262.7 327 47.1
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.3e-66 257.7 296 47.0
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-58 231.1 200 60.0
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.6e-56 224.2 241 48.1
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.3e-55 220.3 188 61.2
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 5.0e-55 219.2 139 77.7
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.1e-53 213.8 267 47.2
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.5e-51 205.3 209 54.1
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.2e-48 198.0 176 61.4
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 3.5e-48 196.4 141 68.1
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.2e-44 182.6 127 74.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.5e-40 169.9 165 57.6
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.5e-38 163.7 112 74.1
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.5e-38 163.7 184 52.2
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-36 157.9 180 53.9
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.0e-35 154.1 188 52.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 1.4e-33 147.9 104 67.3
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.6e-32 144.4 137 54.0
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.6e-31 139.0 114 59.6
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 3.6e-29 133.3 111 64.9
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 4.7e-29 132.9 109 62.4
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 4.4e-27 126.3 90 67.8
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.4e-27 126.3 74 85.1
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 5.8e-27 125.9 249 32.9
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.0e-23 115.2 80 66.2
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 5.1e-23 112.8 88 65.9
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 4.3e-22 109.8 81 65.4
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.1e-20 103.6 85 64.7
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 2.2e-18 97.4 141 45.4
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.1e-17 95.1 50 90.0
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.4e-17 94.0 92 53.3
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.6e-16 91.3 55 78.2
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 1.0e-15 88.6 99 56.6
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.3e-15 87.4 55 80.0
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-14 84.7 219 32.4
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.9e-14 84.3 183 31.7
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.7e-13 79.7 147 35.4
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 5.8e-11 72.8 161 34.8
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 3.8e-10 70.1 68 55.9
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 1.9e-09 67.8 47 61.7
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 3.5e-08 63.5 62 56.5
Psat5g092440 Pisum sativum HOM05D060402 ORTHO05D330647 5.6e-06 56.2 176 31.2
SalBow1G0093 Salvia bowleyana HOM05D005205 ORTHO05D006155 5.6e-06 56.2 81 42.0


User provided reference genes

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