Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 3617.0 1902 100.0
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 3164.4 1905 86.4
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 3162.9 1905 86.4
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 3097.4 2115 78.4
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2644.0 1922 72.4
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2605.9 1925 71.8
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2597.0 1919 71.8
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2596.2 1920 71.8
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2591.2 1918 72.5
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2589.3 1908 72.1
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2570.8 1908 71.6
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2567.7 1915 70.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2557.7 1919 71.4
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2543.5 1913 70.5
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2537.7 1907 70.8
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2528.8 1917 70.2
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2515.3 1917 69.4
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2505.3 1905 69.9
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2504.6 1915 69.3
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2503.0 1913 70.2
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2502.6 1911 70.2
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2493.0 1914 69.5
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2485.3 1930 69.2
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2485.3 1913 69.9
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2481.4 1909 69.3
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2475.3 1950 68.8
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2468.7 1917 69.1
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2456.4 1923 68.1
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2451.0 1913 68.4
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2449.1 1908 68.1
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2432.5 1988 67.1
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2431.4 1918 67.4
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2431.0 1911 69.3
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2429.8 1918 67.6
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2422.1 1917 68.0
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2408.3 2110 63.9
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2407.9 1751 73.3
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2407.5 1911 68.3
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2384.0 1917 66.7
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2370.5 1935 66.8
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2364.3 1924 66.9
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2357.4 1976 65.2
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2349.7 1919 66.4
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2347.0 1887 67.1
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2344.7 1918 66.3
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2332.0 1905 66.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2331.6 1913 66.4
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2327.4 2249 59.1
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2305.0 1713 70.5
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2300.4 1921 66.1
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2299.6 1927 66.2
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2299.2 1866 66.7
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2291.5 1920 65.9
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2268.8 1915 65.0
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2267.3 1927 64.9
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2257.3 1924 64.9
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2256.1 1756 69.9
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2252.6 1893 64.7
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2243.0 1900 64.1
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2234.9 1895 64.4
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2221.4 1927 64.0
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2219.1 1908 64.4
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2212.6 1923 64.0
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2209.1 1893 64.1
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2199.5 1929 63.6
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2184.1 1790 66.9
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2179.1 1931 63.3
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2160.6 1887 64.3
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2159.0 1872 63.4
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2156.3 2015 60.8
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2150.9 1892 63.7
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2148.6 1813 64.6
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2141.3 1889 63.2
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2137.5 1932 61.8
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2132.1 1937 62.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2130.1 1896 63.3
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2125.9 2001 59.3
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2108.2 1950 60.4
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2105.5 1889 62.5
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2105.1 1892 62.0
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2104.7 1890 62.5
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2095.9 1888 62.7
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2089.3 1889 62.3
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2087.0 1890 61.9
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2082.0 1874 62.5
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1986.5 1894 59.8
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1969.5 1519 70.8
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1968.4 1377 73.1
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1915.6 1520 69.0
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1887.8 1873 56.9
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1837.0 1991 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1770.7 1974 52.8
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1685.2 1922 52.1
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1667.5 1837 53.2
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1612.8 1891 51.7
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1511.5 1236 67.6
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1461.8 938 78.0
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1450.3 1290 63.8
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1428.3 1316 63.0
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1377.8 1099 68.6
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1326.2 1246 61.0
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1314.7 1499 53.4
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1186.0 852 71.1
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1167.1 1111 60.8
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1165.6 941 66.2
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 3.3e-305 1052.7 1315 46.4
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 5.6e-297 1025.4 1146 54.5
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 3.6e-288 996.1 675 74.8
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 3.2e-284 983.0 692 74.7
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 7.7e-254 882.1 885 59.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 2.4e-223 780.8 1138 45.0
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 4.5e-222 776.5 983 50.1
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.6e-217 760.8 1319 37.2
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 5.0e-205 719.9 450 82.9
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 4.5e-161 573.9 374 74.6
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 3.8e-152 544.3 1334 31.5
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.3e-147 529.3 366 71.9
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.8e-139 501.5 369 69.1
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.9e-135 488.8 367 67.6
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 2.4e-106 392.1 300 66.0
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.7e-105 387.1 500 47.8
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.3e-99 369.8 580 44.7
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 7.3e-95 354.0 537 49.0
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.2e-91 342.4 298 62.4
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.6e-89 336.3 214 75.2
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.2e-84 320.1 1440 25.3
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.4e-82 312.4 243 69.1
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.6e-81 309.7 198 77.8
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.3e-80 306.6 1124 26.6
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.6e-79 301.2 266 63.5
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 8.1e-70 270.8 264 56.8
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.2e-66 258.8 170 74.1
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 6.9e-61 241.1 227 61.2
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.4e-59 234.2 528 34.1
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 5.6e-55 221.5 246 54.1
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 6.9e-53 214.5 163 63.8
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.5e-52 213.4 190 61.6
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.7e-51 209.9 238 53.8
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.7e-51 209.9 170 60.0
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.3e-48 199.5 284 48.6
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 2.5e-47 196.1 415 37.3
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 8.7e-40 171.0 224 48.2
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 1.3e-38 167.2 106 75.5
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 1.2e-36 160.6 89 83.1
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.6e-33 148.7 128 63.3
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.6e-30 140.2 147 57.8
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 2.0e-28 133.3 75 92.0
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-28 132.9 110 68.2
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 3.8e-27 129.0 115 63.5
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 8.5e-27 127.9 144 54.9
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 7.2e-26 124.8 69 92.8
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 2.3e-24 119.8 87 64.4
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 4.1e-21 109.0 82 61.0
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 9.1e-21 107.8 75 76.0
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 5.9e-20 105.1 60 83.3
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 4.2e-18 99.0 80 67.5
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 9.4e-18 97.8 128 49.2
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.7e-17 96.3 58 82.8
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.7e-17 96.3 58 82.8
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 6.1e-17 95.1 119 47.9
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 2.3e-16 93.2 86 54.7
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 2.3e-16 93.2 58 81.0
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 3.3e-15 89.4 73 60.3
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 1.3e-14 87.4 77 58.4
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 4.1e-13 82.4 41 92.7
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 2.6e-12 79.7 36 97.2
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 8.5e-11 74.7 55 72.7
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 8.5e-11 74.7 76 56.6
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 4.2e-10 72.4 50 80.0
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 3.6e-09 69.3 132 38.6
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.8e-08 67.0 69 47.8
TPR.G21790 Trifolium pratense HOM05D003986 ORTHO05D411817 1.1e-07 64.3 50 70.0
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 4.4e-07 62.4 59 59.3
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 9.7e-07 61.2 105 37.1


User provided reference genes

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