Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 2.0e-195 685.6 353 100.0
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.0e-175 620.2 353 90.4
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 5.0e-175 617.8 355 89.6
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 1.4e-172 609.8 353 89.0
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 2.6e-171 605.5 353 89.2
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 1.9e-158 562.8 355 80.8
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 7.3e-158 560.8 323 87.3
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 7.3e-158 560.8 353 81.6
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.8e-157 558.9 353 81.3
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 6.1e-157 557.8 353 81.9
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 8.0e-157 557.4 353 82.2
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.0e-156 557.0 353 81.3
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 4.0e-156 555.1 353 79.9
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.2e-155 553.5 353 81.3
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.5e-155 553.1 326 84.4
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 2.0e-155 552.7 353 81.3
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 5.7e-155 551.2 353 81.3
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.5e-155 550.8 353 80.2
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.5e-155 550.8 353 80.2
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.3e-154 550.1 353 80.2
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.7e-154 549.7 353 79.9
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.9e-154 548.1 344 80.5
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.9e-154 548.1 353 81.6
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 6.4e-154 547.7 364 78.0
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.3e-154 547.4 353 79.6
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.4e-153 546.6 353 79.6
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.4e-153 546.6 353 81.3
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 4.1e-153 545.0 353 78.8
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 5.4e-153 544.7 332 81.9
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 5.4e-153 544.7 343 81.3
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 7.0e-153 544.3 356 79.2
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.2e-152 543.5 353 79.0
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.2e-152 543.5 353 79.6
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.6e-152 543.1 353 79.6
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 3.5e-152 542.0 353 78.2
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.6e-152 541.6 354 79.4
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 5.9e-152 541.2 381 75.6
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 5.9e-152 541.2 328 82.0
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 7.8e-152 540.8 353 79.3
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 6.6e-151 537.7 354 79.1
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 8.6e-151 537.3 354 78.0
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 8.6e-151 537.3 359 78.0
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.1e-150 537.0 353 78.2
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.1e-150 537.0 323 82.4
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 1.9e-150 536.2 356 79.8
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 1.9e-150 536.2 353 78.5
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.5e-150 535.8 353 78.5
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 2.5e-150 535.8 353 78.8
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 3.3e-150 535.4 341 80.1
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 3.3e-150 535.4 340 78.8
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 3.3e-150 535.4 353 78.8
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 3.3e-150 535.4 360 78.1
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 5.6e-150 534.6 354 78.0
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 9.5e-150 533.9 327 81.3
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 9.5e-150 533.9 353 76.8
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.2e-149 533.5 323 83.3
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 1.2e-149 533.5 323 82.4
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.6e-149 533.1 354 78.2
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 1.6e-149 533.1 356 78.4
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 2.1e-149 532.7 323 82.4
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 3.6e-149 531.9 363 78.0
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 6.2e-149 531.2 343 79.0
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 8.0e-149 530.8 353 79.3
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 8.0e-149 530.8 353 77.6
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.0e-148 530.4 353 79.6
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.4e-148 530.0 326 82.8
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 1.4e-148 530.0 341 79.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.4e-148 530.0 344 79.1
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.8e-148 529.6 353 77.3
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.3e-148 529.3 353 76.2
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 3.1e-148 528.9 323 81.7
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 3.1e-148 528.9 341 79.2
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 4.0e-148 528.5 344 78.5
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 4.0e-148 528.5 353 77.1
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 8.9e-148 527.3 343 77.8
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.5e-147 526.6 330 80.9
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 2.6e-147 525.8 354 76.8
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 2.6e-147 525.8 344 79.1
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 3.4e-147 525.4 323 80.8
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 4.4e-147 525.0 353 77.1
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 7.5e-147 524.2 327 80.7
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 9.8e-147 523.9 341 79.8
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.7e-146 523.1 353 76.2
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 1.7e-146 523.1 354 76.6
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 2.2e-146 522.7 353 76.5
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 2.9e-146 522.3 345 77.7
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 4.9e-146 521.5 362 75.1
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 6.4e-146 521.2 353 76.2
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 8.3e-146 520.8 354 75.7
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.9e-145 519.6 355 75.2
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 9.2e-145 517.3 339 78.2
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 1.6e-144 516.5 353 75.4
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.6e-144 516.5 353 74.8
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.6e-144 516.5 353 74.8
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.6e-144 516.5 353 74.8
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 2.7e-144 515.8 353 73.7
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 4.6e-144 515.0 323 78.9
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 4.6e-144 515.0 323 78.9
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 6.0e-144 514.6 353 73.4
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 1.0e-143 513.8 353 75.4
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 1.0e-143 513.8 353 75.4
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 1.7e-143 513.1 351 76.6
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 3.0e-143 512.3 353 75.4
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 3.9e-143 511.9 328 78.0
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 8.6e-143 510.8 353 73.1
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 2.5e-142 509.2 342 78.4
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 4.3e-142 508.4 354 73.7
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 1.6e-141 506.5 319 78.7
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 8.9e-140 500.7 382 70.9
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.2e-139 500.4 354 77.4
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.5e-136 488.8 353 74.8
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.1e-132 477.2 340 70.3
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.2e-130 469.5 324 72.5
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 3.8e-130 468.8 353 71.1
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 6.4e-130 468.0 316 74.4
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.2e-128 463.8 353 70.0
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.2e-128 463.8 353 70.0
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 4.6e-128 461.8 340 68.8
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.0e-127 460.7 311 74.0
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 3.0e-127 459.1 358 67.3
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 3.9e-127 458.8 324 71.3
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 1.5e-126 456.8 323 72.4
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 4.3e-126 455.3 327 70.9
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.2e-125 453.8 354 71.8
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 3.4e-123 445.7 291 78.4
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 3.4e-123 445.7 291 78.4
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 4.4e-123 445.3 323 66.9
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 7.6e-123 444.5 335 66.6
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 9.9e-123 444.1 353 66.9
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 1.4e-121 440.3 353 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.4e-121 439.5 315 69.2
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 5.1e-119 431.8 353 66.3
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 1.1e-118 430.6 315 67.3
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 9.3e-113 411.0 259 78.8
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.9e-111 405.6 318 62.9
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 1.6e-109 400.2 231 84.8
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 3.1e-108 396.0 336 58.6
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 3.1e-108 396.0 322 62.4
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.5e-99 365.5 228 78.5
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 4.2e-97 359.0 261 70.9
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.5e-94 350.5 199 85.9
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 7.7e-83 311.6 298 56.0
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 3.7e-77 292.7 248 62.9
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 6.9e-76 288.5 220 68.2
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.1e-70 271.2 185 76.2
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.5e-65 253.4 182 66.5
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.5e-65 253.4 182 66.5
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.3e-58 231.1 165 66.7
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 3.2e-57 226.5 131 85.5
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 3.0e-55 219.9 119 89.1
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 2.6e-54 216.9 123 86.2
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 3.5e-51 206.5 122 77.9
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 2.8e-45 186.8 164 61.6
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 4.1e-44 183.0 164 61.0
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 3.8e-42 176.4 164 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.5e-35 153.3 127 61.4
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 5.2e-31 139.4 118 66.1
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 2.4e-28 130.6 92 76.1
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.0e-26 125.2 164 43.9
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 5.6e-25 119.4 70 84.3
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.0e-22 110.9 90 65.6
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 6.0e-19 99.4 78 61.5
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.1e-17 95.1 69 68.1
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.7e-16 89.7 112 44.6
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 1.4e-15 88.2 78 57.7
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.1e-11 74.3 146 39.7
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 2.8e-08 63.9 51 66.7
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 3.6e-08 63.5 42 83.3
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 6.2e-08 62.8 36 75.0


User provided reference genes

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