Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 0.0e+00 1082.4 560 100.0
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 4.4e-258 894.4 566 82.5
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.3e-246 856.3 569 79.6
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.6e-231 806.2 569 76.6
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 2.7e-159 566.2 567 56.8
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 4.7e-159 565.5 567 56.6
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.3e-157 559.3 561 57.4
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.7e-156 557.0 392 74.5
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.8e-155 553.5 535 57.6
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 8.0e-151 538.1 578 54.3
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 1.4e-150 537.3 563 53.6
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 2.3e-150 536.6 535 55.7
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 1.2e-149 534.3 532 56.0
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 7.5e-149 531.6 580 51.9
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 3.7e-148 529.3 567 54.0
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.4e-147 527.3 569 53.6
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 1.5e-144 517.3 560 52.1
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.9e-144 516.9 575 52.7
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 3.3e-144 516.2 575 52.7
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.7e-143 512.3 560 52.1
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.0e-142 511.1 559 53.0
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 7.5e-141 505.0 561 51.7
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 1.7e-140 503.8 563 52.6
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.4e-139 500.0 560 50.9
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.5e-138 496.1 560 50.7
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 2.9e-137 493.0 561 51.0
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 6.6e-137 491.9 538 52.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.6e-137 491.5 534 51.9
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.6e-136 488.8 543 50.6
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 6.1e-135 485.3 566 51.4
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 2.3e-134 483.4 563 50.8
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 5.2e-134 482.3 570 49.3
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 5.2e-134 482.3 572 49.1
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.8e-134 481.9 532 51.1
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 8.9e-134 481.5 545 49.4
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 1.2e-133 481.1 543 50.1
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.2e-133 481.1 558 50.4
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.2e-133 481.1 570 48.6
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.5e-133 480.7 563 50.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.0e-133 480.3 543 49.9
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 3.4e-133 479.6 577 49.9
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.3e-132 477.6 574 49.5
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.9e-132 476.5 559 50.4
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 6.4e-132 475.3 538 50.4
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.8e-131 473.8 557 51.0
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 3.5e-130 469.5 562 49.6
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 4.6e-130 469.2 575 49.0
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 3.3e-128 463.0 566 47.9
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 9.5e-128 461.5 619 46.4
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.4e-126 457.6 557 50.1
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 1.2e-125 454.5 486 53.5
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 5.8e-125 452.2 563 49.7
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 7.5e-125 451.8 479 54.7
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 7.5e-125 451.8 569 48.2
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 4.6e-122 442.6 560 48.6
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 2.3e-121 440.3 597 47.1
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.5e-120 437.6 576 45.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 4.3e-120 436.0 590 45.8
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 9.5e-120 434.9 568 47.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.2e-119 434.5 560 45.5
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 3.6e-119 433.0 564 46.3
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 3.6e-119 433.0 557 44.2
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 8.1e-119 431.8 597 46.2
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.3e-118 430.3 558 45.0
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 2.3e-118 430.3 563 47.1
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 2.3e-118 430.3 588 44.7
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.5e-117 427.6 542 45.9
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 7.5e-117 425.2 564 45.6
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 1.3e-116 424.5 593 44.2
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 4.9e-116 422.5 564 44.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 8.3e-116 421.8 591 43.8
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.1e-115 421.4 572 46.2
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.9e-115 420.6 569 44.8
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 3.2e-115 419.9 565 45.7
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 7.1e-115 418.7 564 44.1
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.2e-114 417.9 604 43.9
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 2.7e-114 416.8 572 47.7
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.6e-114 416.0 447 53.2
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 3.9e-113 412.9 567 45.1
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.5e-112 410.2 551 44.5
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 5.6e-112 409.1 555 44.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 1.2e-111 407.9 555 43.8
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.6e-111 407.5 549 44.1
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 2.1e-111 407.1 560 45.0
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.6e-111 406.4 608 42.8
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 4.7e-111 406.0 551 44.6
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.4e-110 404.4 553 44.1
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.8e-110 404.1 575 44.7
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 2.9e-108 396.7 578 43.8
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 3.8e-108 396.4 574 44.3
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.0e-105 388.3 567 42.9
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.3e-105 387.9 555 42.5
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.7e-105 387.5 553 43.0
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 1.5e-104 384.4 569 42.5
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.6e-104 382.5 561 42.4
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 1.4e-102 377.9 568 43.1
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 2.2e-100 370.5 302 61.3
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 2.4e-99 367.1 566 41.0
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 4.2e-99 366.3 576 42.9
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.2e-98 364.8 526 45.2
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 4.6e-98 362.8 591 39.9
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.3e-97 360.5 594 41.6
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 4.8e-95 352.8 585 41.0
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 9.0e-94 348.6 544 42.5
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 7.6e-93 345.5 468 44.0
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 6.0e-90 335.9 550 40.5
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 5.3e-86 322.8 546 39.4
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.3e-84 318.2 713 33.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.7e-84 317.8 536 39.6
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 6.4e-84 315.8 534 40.1
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.4e-84 315.8 656 35.1
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 2.4e-83 313.9 564 37.2
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 9.3e-83 312.0 500 39.8
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 3.9e-81 306.6 575 36.9
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 4.6e-66 256.5 454 39.0
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 4.6e-66 256.5 185 70.8
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.4e-65 255.0 545 33.8
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 1.1e-64 251.9 540 33.7
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.5e-64 251.5 613 32.3
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.2e-60 237.7 666 29.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.9e-60 237.3 263 46.0
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 5.3e-54 216.5 207 53.1
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 4.5e-53 213.4 688 30.8
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.1e-51 208.8 457 33.9
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 4.8e-47 193.4 448 33.9
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.6e-45 187.6 516 31.0
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 4.2e-43 180.3 484 30.0
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 1.6e-34 151.8 290 31.0
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 3.6e-34 150.6 140 53.6
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 3.0e-33 147.5 274 33.9
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 3.0e-33 147.5 165 55.2
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.0e-33 147.5 544 25.4
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 6.3e-31 139.8 149 55.7
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 5.4e-30 136.7 473 25.4
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.2e-24 119.0 91 63.7
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 7.0e-22 109.8 297 25.6
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 1.8e-17 95.1 77 59.7
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.8e-17 95.1 77 59.7
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 2.0e-16 91.7 163 33.7
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 7.5e-16 89.7 125 48.8
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 5.8e-08 63.5 79 44.3


User provided reference genes

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