Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 1.7e-243 845.5 416 100.0
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 7.4e-210 733.8 418 85.9
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 1.3e-201 706.4 418 84.9
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 2.4e-200 702.2 418 84.7
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 1.6e-196 689.5 418 83.3
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 1.3e-161 573.5 418 67.7
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.8e-160 569.7 419 67.3
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.6e-159 566.6 420 67.1
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 3.5e-159 565.5 419 67.3
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 3.8e-158 562.0 419 67.3
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 8.5e-158 560.8 420 67.1
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.5e-157 560.1 428 65.7
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 2.1e-156 556.2 421 67.0
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 2.7e-156 555.8 426 65.7
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 3.6e-156 555.4 421 67.0
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 8.0e-156 554.3 416 67.1
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 8.0e-156 554.3 418 66.7
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.8e-155 553.1 421 66.0
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 3.0e-155 552.4 421 67.0
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 1.2e-154 550.4 419 65.6
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 2.0e-154 549.7 419 66.6
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 3.4e-154 548.9 447 63.3
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.4e-154 548.5 416 66.3
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 7.5e-154 547.7 424 64.6
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 7.5e-154 547.7 423 65.5
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 1.7e-153 546.6 420 64.0
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 3.7e-153 545.4 419 64.2
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.6e-151 540.0 417 64.0
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.6e-151 540.0 417 63.8
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.7e-151 539.3 422 62.3
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.7e-151 539.3 422 63.7
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 5.9e-151 538.1 419 62.1
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 3.8e-150 535.4 417 63.3
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 1.5e-149 533.5 421 62.9
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 1.5e-149 533.5 421 63.4
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.9e-149 533.1 426 62.2
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.5e-149 532.7 426 62.7
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.5e-149 532.7 426 62.7
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 7.3e-149 531.2 419 63.0
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 1.6e-148 530.0 426 63.1
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.6e-148 530.0 424 61.6
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 2.1e-148 529.6 419 62.8
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.8e-148 529.3 390 66.4
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 2.8e-148 529.3 414 63.8
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 3.6e-148 528.9 410 63.7
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.7e-148 528.5 423 62.6
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 6.1e-148 528.1 424 62.3
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 8.0e-148 527.7 416 64.7
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 1.0e-147 527.3 418 62.9
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 1.4e-147 526.9 424 61.1
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 2.3e-147 526.2 423 62.6
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 2.3e-147 526.2 422 62.6
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 4.0e-147 525.4 429 63.2
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.8e-147 524.6 419 62.8
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.8e-147 524.6 422 62.6
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.5e-146 523.5 430 61.6
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.0e-146 523.1 424 61.6
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.7e-146 521.5 418 61.7
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 8.3e-145 517.7 412 61.9
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 1.2e-143 513.8 418 62.0
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 4.6e-143 511.9 422 60.4
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 7.8e-143 511.1 418 62.4
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.0e-142 510.8 426 60.6
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.3e-142 510.4 493 52.7
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.7e-142 510.0 392 65.6
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 9.5e-141 504.2 414 59.7
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 1.2e-140 503.8 407 63.1
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 2.1e-140 503.1 417 60.7
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.1e-140 503.1 415 59.8
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 8.0e-140 501.1 415 59.5
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 1.4e-139 500.4 417 58.3
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.8e-139 500.0 417 59.0
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.8e-139 500.0 391 63.2
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 2.0e-138 496.5 418 58.9
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 4.4e-138 495.4 417 57.8
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 5.8e-138 495.0 420 59.5
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 7.5e-138 494.6 528 51.5
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 2.2e-137 493.0 466 54.3
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 4.9e-137 491.9 521 49.7
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.4e-137 491.5 422 59.0
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.9e-136 490.0 418 58.9
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 4.1e-136 488.8 419 57.3
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.6e-135 486.9 422 57.6
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 2.7e-135 486.1 420 57.6
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 7.8e-135 484.6 421 58.4
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.1e-133 480.7 418 56.7
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 7.3e-133 478.0 405 60.5
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 7.3e-133 478.0 413 55.7
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 2.8e-132 476.1 463 55.3
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 2.8e-132 476.1 432 54.6
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 3.6e-132 475.7 422 55.9
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 1.2e-130 470.7 412 56.1
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.6e-130 469.5 417 55.9
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 2.9e-129 466.1 391 58.8
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 8.3e-129 464.5 416 55.5
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 3.2e-128 462.6 416 56.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 6.0e-127 458.4 413 57.1
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 1.7e-126 456.8 417 54.7
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 3.0e-126 456.1 428 54.4
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 5.1e-126 455.3 446 52.0
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 7.3e-125 451.4 453 51.0
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 1.6e-124 450.3 453 51.0
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 2.8e-124 449.5 416 53.6
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 4.0e-123 445.7 417 52.8
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 3.4e-122 442.6 369 61.0
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 9.9e-122 441.0 418 52.6
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 2.9e-121 439.5 418 52.4
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 2.9e-121 439.5 418 52.4
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.5e-111 406.0 338 59.2
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 3.5e-111 406.0 338 59.2
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 3.4e-106 389.4 419 50.6
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 4.5e-106 389.0 440 47.5
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.4e-104 384.0 435 45.1
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 1.6e-103 380.6 409 45.7
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.1e-101 374.4 413 45.5
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 8.7e-94 348.2 265 63.4
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 6.2e-92 342.0 414 46.4
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.1e-87 327.0 283 58.0
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.8e-83 313.9 170 81.2
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 2.5e-80 303.5 425 41.2
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 7.4e-77 292.0 334 50.0
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.5e-74 282.7 141 86.5
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.4e-72 277.7 157 78.3
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 3.0e-70 270.0 539 33.4
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.6e-66 256.9 144 79.9
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 1.4e-54 218.0 121 76.0
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 8.8e-46 188.7 91 86.8
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 8.3e-36 155.6 160 51.9
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.9e-32 144.4 81 80.2
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.6e-32 142.9 242 37.2
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.5e-29 132.5 73 84.9
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 7.5e-29 132.5 73 84.9
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 7.0e-27 125.9 66 84.8
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 1.2e-23 115.2 59 83.1
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 7.5e-21 105.9 66 74.2
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 1.7e-17 94.7 137 40.1
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.6e-17 92.8 74 62.2
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 6.2e-15 86.3 187 31.0
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.6e-13 80.9 59 67.8
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 2.6e-13 80.9 74 55.4


User provided reference genes

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