Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 0.0e+00 1098.2 586 100.0
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 2.2e-276 955.3 591 85.3
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 6.0e-274 947.2 593 84.5
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 3.3e-272 941.4 578 88.1
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 5.8e-269 930.6 601 82.7
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 5.2e-209 731.5 582 69.6
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 8.2e-207 724.2 600 67.3
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 5.3e-206 721.5 601 65.6
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.0e-205 719.5 601 65.4
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 5.9e-205 718.0 584 68.8
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.3e-204 716.8 598 64.5
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 6.5e-204 714.5 595 65.5
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.2e-202 710.3 601 64.1
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 3.0e-201 705.7 601 63.6
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 4.4e-200 701.8 585 69.2
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 4.4e-200 701.8 592 64.4
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 2.2e-199 699.5 582 69.4
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.8e-199 699.1 586 64.3
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 2.2e-196 689.5 585 68.0
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 2.9e-196 689.1 595 65.0
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 2.9e-196 689.1 594 64.8
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 6.5e-196 688.0 613 62.5
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 8.5e-196 687.6 600 66.5
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 8.5e-196 687.6 585 65.5
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.5e-195 686.8 582 65.8
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 2.5e-195 686.0 583 61.9
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 7.2e-195 684.5 603 61.5
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.1e-194 682.9 583 65.2
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 5.2e-193 678.3 592 65.7
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 1.2e-192 677.2 582 62.7
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.5e-192 676.8 592 64.9
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 2.0e-192 676.4 587 62.0
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 4.8e-191 671.8 596 64.6
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.4e-190 670.2 589 63.2
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.4e-190 670.2 580 63.1
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.8e-190 669.8 603 61.7
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 3.1e-190 669.1 512 71.3
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 9.1e-190 667.5 587 62.2
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.2e-189 667.2 590 63.4
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.2e-189 667.2 580 63.4
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.2e-189 667.2 608 63.0
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.6e-189 666.8 588 61.7
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.5e-189 665.2 568 65.8
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 5.9e-189 664.8 626 62.5
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 7.7e-189 664.5 577 64.6
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 2.2e-188 662.9 605 62.6
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 6.5e-188 661.4 595 60.5
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 1.1e-187 660.6 597 60.6
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.1e-187 660.6 581 61.8
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.5e-187 660.2 576 61.5
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.9e-187 659.8 577 62.7
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.2e-187 658.7 609 58.9
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 5.5e-187 658.3 587 63.0
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 2.8e-186 656.0 614 58.8
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 6.1e-186 654.8 571 61.6
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.4e-185 653.7 576 61.1
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 1.4e-185 653.7 586 63.1
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.3e-185 652.9 577 61.0
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 3.0e-185 652.5 587 62.0
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 3.0e-185 652.5 659 59.9
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 5.2e-185 651.7 590 60.7
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 1.2e-184 650.6 589 62.8
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 2.0e-184 649.8 595 61.8
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 2.0e-184 649.8 600 59.2
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 2.6e-184 649.4 588 61.2
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 4.4e-184 648.7 575 60.3
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 5.7e-184 648.3 530 67.9
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 7.5e-184 647.9 600 59.3
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 9.8e-184 647.5 594 62.8
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.8e-183 646.0 488 68.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.7e-183 645.6 625 57.8
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 4.9e-183 645.2 577 60.0
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 4.9e-183 645.2 606 58.1
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 4.9e-183 645.2 589 59.8
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.1e-182 644.0 600 58.5
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.8e-182 643.3 599 60.8
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.1e-182 642.5 599 59.8
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 7.0e-182 641.3 598 61.2
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 1.2e-181 640.6 636 59.3
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.2e-181 640.6 601 60.6
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 1.6e-181 640.2 568 60.9
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 2.7e-181 639.4 606 56.6
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.3e-180 637.1 597 58.3
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.7e-180 636.7 609 57.3
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 2.3e-180 636.3 517 66.5
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 6.6e-180 634.8 595 61.8
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 1.5e-179 633.6 600 60.7
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.9e-179 633.3 573 60.9
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.7e-178 628.6 622 57.6
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.4e-177 627.1 637 55.4
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 1.8e-177 626.7 585 60.2
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 8.9e-177 624.4 591 61.3
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.2e-176 624.0 595 59.5
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 3.4e-176 622.5 602 56.5
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 9.8e-176 620.9 619 54.9
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.7e-175 620.2 597 58.5
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.3e-175 617.8 590 60.7
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.1e-174 617.5 587 60.5
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.4e-174 615.1 614 58.8
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 9.2e-174 614.4 593 60.5
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 1.6e-173 613.6 598 59.4
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.0e-172 610.9 597 58.6
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.3e-172 610.5 586 57.2
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 2.3e-172 609.8 602 59.1
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 6.6e-172 608.2 582 62.4
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 1.5e-171 607.1 594 60.1
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 4.3e-171 605.5 599 56.6
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.3e-171 605.5 536 60.4
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.2e-170 604.0 622 57.1
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.1e-170 603.2 590 57.8
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.1e-170 603.2 595 57.6
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 2.1e-170 603.2 595 57.8
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.3e-169 599.7 598 58.0
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 3.1e-169 599.4 599 56.1
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 3.1e-169 599.4 595 56.1
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 5.2e-169 598.6 645 55.2
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 1.2e-168 597.4 645 55.3
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 1.5e-168 597.0 484 66.5
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 1.7e-167 593.6 595 56.5
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 2.9e-167 592.8 587 57.4
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 7.8e-165 584.7 561 57.9
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 9.5e-163 577.8 578 56.1
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-162 577.4 591 57.4
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 2.0e-160 570.1 567 57.5
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 7.5e-160 568.2 562 58.9
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 8.3e-159 564.7 566 58.8
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 6.0e-157 558.5 470 64.5
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 6.6e-156 555.1 559 58.9
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.1e-153 547.7 556 57.2
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 1.8e-153 547.0 501 59.9
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.9e-151 539.7 574 52.6
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 7.1e-150 535.0 564 55.0
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 2.0e-144 516.9 593 52.3
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.4e-142 510.8 584 52.4
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 2.5e-139 500.0 464 62.3
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.1e-137 494.6 623 46.9
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 7.6e-136 488.4 556 49.3
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 4.9e-135 485.7 584 49.8
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 1.1e-129 468.0 388 68.3
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 9.3e-126 454.9 565 47.6
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 1.9e-123 447.2 572 46.9
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.4e-120 436.4 438 54.3
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 7.4e-115 418.7 338 65.4
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 2.5e-110 403.7 392 59.2
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.4e-97 360.5 315 62.9
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.9e-94 350.9 626 36.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 9.4e-94 348.6 380 53.4
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.2e-93 348.2 334 59.0
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 3.3e-62 243.8 163 76.7
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 1.8e-60 238.0 270 54.8
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.1e-53 214.5 227 56.4
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 4.0e-52 210.3 243 49.0
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 2.3e-47 194.5 138 74.6
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.4e-36 158.7 290 33.4
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 9.6e-30 136.0 167 52.1
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 1.2e-29 135.6 452 25.4
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 4.9e-26 123.6 533 23.5
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 3.4e-19 100.9 82 57.3
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 4.5e-19 100.5 78 56.4
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 4.5e-19 100.5 149 43.0
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 3.8e-18 97.4 67 76.1
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.6e-16 92.0 88 56.8
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.8e-15 88.6 70 62.9
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 2.5e-14 84.7 83 57.8
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 4.8e-13 80.5 72 55.6
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 6.2e-13 80.1 100 46.0
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.8e-12 78.6 199 35.7
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 6.9e-12 76.6 103 45.6
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.5e-06 58.9 35 80.0
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 3.3e-06 57.8 70 50.0
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 4.3e-06 57.4 36 77.8


User provided reference genes

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