Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 0.0e+00 1783.5 951 100.0
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 0.0e+00 1534.6 952 84.1
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 0.0e+00 1531.5 955 83.2
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 0.0e+00 1522.3 954 82.6
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 4.9e-302 1041.2 880 61.7
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.2e-292 1010.0 877 59.0
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 6.3e-281 971.1 917 56.4
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 2.4e-280 969.1 882 57.9
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 5.9e-279 964.5 890 58.1
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 1.4e-277 959.9 879 57.1
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 3.2e-277 958.7 881 57.8
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 5.5e-277 958.0 879 56.3
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 3.0e-275 952.2 891 55.4
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 5.1e-275 951.4 883 57.1
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 4.1e-272 941.8 883 57.0
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 5.3e-272 941.4 894 56.4
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 3.4e-271 938.7 882 56.2
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 2.9e-270 935.6 882 55.4
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 1.1e-269 933.7 884 55.0
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 3.2e-269 932.2 884 55.0
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 7.4e-266 921.0 875 56.1
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 9.1e-264 914.1 879 56.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 7.7e-263 911.0 879 55.9
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 2.3e-259 899.4 875 54.5
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 5.7e-258 894.8 877 53.4
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 2.2e-257 892.9 877 53.7
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 8.2e-257 891.0 874 53.0
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.3e-256 888.3 874 52.9
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 1.2e-255 887.1 864 53.6
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 4.2e-253 878.6 876 53.4
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 9.4e-253 877.5 852 55.0
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.2e-252 877.1 877 52.6
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 2.7e-252 875.9 885 53.2
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.7e-252 875.2 874 52.4
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 2.0e-250 869.8 761 58.9
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 7.5e-250 867.8 882 52.5
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.8e-249 865.9 874 51.7
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 3.1e-248 862.4 852 54.0
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 1.2e-247 860.5 877 52.2
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.0e-247 859.8 883 52.7
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 6.5e-246 854.7 905 51.8
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 6.5e-246 854.7 852 54.1
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 3.2e-245 852.4 874 51.9
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 5.5e-245 851.7 880 51.7
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 7.2e-245 851.3 883 52.7
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.1e-244 849.7 878 51.8
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 1.4e-243 847.0 881 51.5
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 3.0e-243 845.9 881 51.6
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 5.7e-242 841.6 850 53.8
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 9.8e-242 840.9 900 51.9
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 2.2e-241 839.7 876 51.3
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 6.3e-241 838.2 884 51.5
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 1.8e-240 836.6 896 50.8
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 1.1e-237 827.4 869 52.2
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.4e-235 820.5 839 52.1
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 4.0e-235 818.9 909 50.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 4.9e-233 812.0 856 51.6
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.1e-232 810.8 876 50.6
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 4.6e-231 805.4 917 49.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 4.6e-231 805.4 876 50.5
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.3e-230 803.1 806 54.2
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 2.1e-228 796.6 877 49.5
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 2.0e-226 790.0 853 50.4
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.5e-226 788.1 880 48.6
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 6.4e-225 785.0 874 48.9
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 1.3e-222 777.3 890 48.9
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 2.3e-222 776.5 914 47.5
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 1.1e-221 774.2 884 48.2
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.6e-220 770.4 864 47.9
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 2.6e-218 763.1 943 45.8
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 5.4e-216 755.4 851 48.5
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.2e-212 744.2 877 48.9
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 2.2e-209 733.4 854 48.6
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 3.5e-207 726.1 866 45.6
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 4.6e-207 725.7 886 46.8
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 3.3e-205 719.5 890 45.6
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.6e-202 709.9 882 45.9
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 4.4e-202 709.1 882 45.8
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.7e-201 707.2 1337 36.2
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 5.4e-200 702.2 854 46.1
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 8.1e-196 688.3 896 44.9
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 2.4e-195 686.8 877 45.4
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.2e-193 680.2 853 46.1
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.9e-193 679.9 875 44.9
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 3.8e-193 679.5 861 45.4
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 3.8e-193 679.5 861 45.4
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 1.9e-189 667.2 861 44.7
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 2.5e-189 666.8 861 44.6
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 5.6e-189 665.6 861 44.6
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.1e-188 663.7 864 45.1
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 3.8e-185 652.9 852 43.5
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 6.4e-185 652.1 852 43.8
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 1.4e-184 651.0 858 42.7
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 9.3e-184 648.3 857 42.8
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 2.7e-183 646.7 852 43.5
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 6.0e-183 645.6 832 42.5
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.8e-182 644.0 852 43.2
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 2.5e-181 640.2 857 42.8
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 1.8e-179 634.0 853 42.4
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 6.9e-179 632.1 882 42.6
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 2.6e-178 630.2 759 47.6
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.9e-176 624.0 677 51.6
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 1.3e-172 611.3 874 41.3
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 1.3e-169 601.3 901 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 7.2e-168 595.5 877 41.2
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 5.1e-166 589.3 1378 31.6
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 7.4e-165 585.5 525 58.1
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 1.0e-158 565.1 854 41.8
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 7.4e-157 558.9 862 39.8
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 9.7e-157 558.5 898 39.4
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 4.7e-143 513.1 872 39.3
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 1.4e-142 511.5 570 51.9
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 5.7e-133 479.6 465 54.6
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 1.7e-129 468.0 419 56.8
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.6e-127 460.3 410 57.1
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 4.4e-117 426.8 652 41.4
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 3.5e-114 417.2 335 63.3
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 1.5e-104 385.2 388 50.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 3.3e-104 384.0 320 60.3
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.2e-103 382.1 436 48.6
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 1.4e-99 368.6 794 31.0
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.0e-97 362.5 1112 26.0
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 2.3e-97 361.3 803 32.0
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 8.1e-95 352.8 412 45.6
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 5.2e-94 350.1 312 56.7
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 4.9e-92 343.6 389 48.1
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.9e-88 331.6 482 39.6
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 9.6e-88 329.3 358 48.9
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 9.0e-86 322.8 392 46.2
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 9.9e-85 319.3 458 40.8
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 1.7e-84 318.5 363 48.5
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 2.1e-82 311.6 373 45.8
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 8.7e-81 306.2 270 57.8
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.0e-78 297.4 596 34.4
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-70 272.7 348 44.0
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 4.9e-68 263.8 250 53.6
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.1e-67 262.7 420 37.4
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 5.1e-65 253.8 285 47.0
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 3.4e-61 241.1 195 59.0
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.5e-58 231.1 505 31.3
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 5.7e-56 223.8 179 61.5
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 1.6e-55 222.2 279 46.2
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.8e-54 218.8 337 38.9
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 4.1e-54 217.6 181 61.9
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 2.0e-45 188.7 354 31.9
Cre10.g464950 Chlamydomonas reinhardtii HOM05D003469 ORTHO05D004084 6.5e-44 183.7 326 34.7
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 1.9e-43 182.2 139 60.4
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 1.0e-41 176.4 337 38.6
Psat0s3379g0080 Pisum sativum HOM05D003469 ORTHO05D004084 1.1e-38 166.4 200 46.5
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 9.1e-38 163.3 184 52.2
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.7e-37 160.2 160 50.0
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 2.7e-34 151.8 243 35.8
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 6.1e-34 150.6 129 57.4
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.4e-32 143.7 119 55.5
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 4.1e-30 137.9 200 44.0
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.0e-29 135.6 146 52.7
Ca_16137_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 2.6e-29 135.2 181 44.2
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 4.5e-29 134.4 128 51.6
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 1.3e-28 132.9 127 58.3
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 1.1e-27 129.8 100 63.0
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 2.5e-27 128.6 83 66.3
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.5e-27 128.6 151 45.7
SEGI_26656 Sequoiadendron giganteum HOM05D003469 ORTHO05D000001 6.1e-26 124.0 134 50.0
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 6.8e-25 120.6 88 65.9
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 2.8e-23 115.2 89 65.2
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 2.8e-23 115.2 136 46.3
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 1.1e-22 113.2 87 63.2
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.4e-22 112.8 84 57.1
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 4.5e-21 107.8 80 68.8
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 2.7e-18 98.6 104 49.0
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.4e-16 91.7 165 36.4
MCO03G148 Micromonas commoda HOM05D003469 ORTHO05D004084 2.2e-15 89.0 900 19.9
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 1.8e-14 85.9 104 40.4
Ca_19033_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 1.1e-11 76.6 59 57.6
AagrBONN_evm.TU.Sc2ySwM_362.2853 Anthoceros agrestis HOM05D003469 ORTHO05D004084 3.3e-11 75.1 96 38.5
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 3.3e-11 75.1 957 22.6
MD17G1140900 Malus domestica HOM05D003469 ORTHO05D004084 2.8e-10 72.0 78 52.6
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 1.8e-09 69.3 41 68.3
Lj9A422T78 Lonicera japonica HOM05D003469 ORTHO05D029064 7.5e-08 63.9 85 45.9
Medtr4g074700 Medicago truncatula HOM05D003469 ORTHO05D004084 1.7e-07 62.8 103 36.9
Lsat_1_v5_gn_6_14080 Lactuca sativa HOM05D002718 ORTHO05D004084 2.2e-07 62.4 77 42.9
QL01p054481 Quercus lobata HOM05D003469 ORTHO05D004084 2.4e-06 58.9 48 50.0
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 3.2e-06 58.5 84 44.0
Actinidia02458 Actinidia chinensis HOM05D003469 ORTHO05D004084 7.0e-06 57.4 67 49.3


User provided reference genes

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