Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013445 Sechium edule HOM05D006280 ORTHO05D007876 0.0e+00 1085.9 611 100.0
MELO3C023535.2 Cucumis melo HOM05D006280 ORTHO05D007876 7.2e-222 774.2 661 68.5
Sed0005202 Sechium edule HOM05D006280 ORTHO05D007876 8.6e-207 724.2 679 65.2
ClCG09G004310 Citrullus lanatus HOM05D006280 ORTHO05D007876 1.3e-199 700.3 712 61.8
CsaV3_7G031230 Cucumis sativus L. HOM05D006280 ORTHO05D007876 1.8e-156 557.0 539 64.4
Haze_03235 Corylus avellana HOM05D006280 ORTHO05D007876 2.4e-124 450.3 658 44.8
Thecc.01G413600 Theobroma cacao HOM05D006280 ORTHO05D007876 2.3e-119 433.7 657 43.5
QL04p005292 Quercus lobata HOM05D006280 ORTHO05D007876 6.7e-119 432.2 655 43.7
Gohir.D11G166400 Gossypium hirsutum HOM05D006280 ORTHO05D007876 5.0e-114 416.0 648 41.5
Gorai.007G177400 Gossypium raimondii HOM05D006280 ORTHO05D007876 5.0e-114 416.0 648 41.5
Gohir.A11G160200 Gossypium hirsutum HOM05D006280 ORTHO05D007876 1.1e-113 414.8 648 41.7
TWI09G0861 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 2.5e-113 413.7 644 41.9
MD02G1315100 Malus domestica HOM05D006280 ORTHO05D007876 4.2e-113 412.9 620 45.5
CSS0048133 Camellia sinensis var. sinensis HOM05D006280 ORTHO05D007876 2.1e-112 410.6 673 40.6
CiPaw.13G003200 Carya illinoinensis HOM05D006280 ORTHO05D007876 2.1e-112 410.6 652 42.8
Lj9A629T105 Lonicera japonica HOM05D006280 ORTHO05D007876 3.6e-112 409.8 624 44.6
Hma1.2p1_0280F.1_g112910 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 6.3e-109 399.1 674 41.7
Prupe.2G009900 Prunus persica HOM05D006280 ORTHO05D007876 5.3e-108 396.0 623 46.5
TWI73G0538 Tripterygium wilfordii HOM05D006280 ORTHO05D007876 7.0e-108 395.6 655 40.9
Duzib268G1473 Durio zibethinus HOM05D006280 ORTHO05D007876 2.0e-107 394.0 656 40.1
Potri.001G269700 Populus trichocarpa HOM05D006280 ORTHO05D007876 1.0e-103 381.7 644 41.0
CAN.G170.124 Capsicum annuum HOM05D006280 ORTHO05D007876 1.4e-103 381.3 698 38.0
Ciclev10030953m.g Citrus clementina HOM05D006280 ORTHO05D007876 1.5e-102 377.9 619 42.3
Peaxi162Scf00428g00816 Petunia axillaris HOM05D006280 ORTHO05D007876 2.0e-102 377.5 708 37.1
Actinidia20679 Actinidia chinensis HOM05D006280 ORTHO05D007876 2.6e-102 377.1 710 38.5
Nitab4.5_0003361g0010 Nicotiana tabacum HOM05D006280 ORTHO05D007876 8.3e-101 372.1 706 36.8
PGSC0003DMG400006815 Solanum tuberosum HOM05D006280 ORTHO05D007876 8.3e-101 372.1 697 37.3
Eucgr.J01260 Eucalyptus grandis HOM05D006280 ORTHO05D007876 3.5e-99 366.7 610 40.5
Sopen01g033930 Solanum pennellii HOM05D006280 ORTHO05D007876 1.5e-97 361.3 696 36.9
FAN03G0134 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.0e-95 355.1 611 42.9
PGR044G1516 Punica granatum HOM05D006280 ORTHO05D007876 1.8e-95 354.4 624 40.5
Cpa.g.sc234.10 Carica papaya HOM05D006280 ORTHO05D007876 6.8e-95 352.4 624 38.5
SGA_v2.0_scaffold167G38459 Striga asiatica HOM05D006280 ORTHO05D007876 1.2e-94 351.7 703 37.1
Nitab4.5_0001542g0030 Nicotiana tabacum HOM05D006280 ORTHO05D007876 2.0e-94 350.9 689 35.4
SalBow7G2237 Salvia bowleyana HOM05D006280 ORTHO05D007876 9.8e-94 348.6 709 37.2
MSTRG.20601 Avicennia marina HOM05D006280 ORTHO05D007876 3.7e-93 346.7 701 37.1
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 1.4e-92 344.7 588 41.5
Aa31LG10G7200 Aethionema arabicum HOM05D006280 ORTHO05D007876 3.2e-92 343.6 640 37.8
THA.LOC104817627 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.6e-91 341.3 670 37.6
CANSAT01G2414 Cannabis sativa HOM05D006280 ORTHO05D007876 3.5e-91 340.1 627 39.9
Hund03633 Selenicereus undatus HOM05D006280 ORTHO05D007876 1.3e-90 338.2 661 36.5
GSVIVG01032060001 Vitis vinifera HOM05D006280 ORTHO05D007876 2.9e-90 337.0 591 40.6
Sc14g0005130 Simmondsia chinensis HOM05D006280 ORTHO05D007876 1.1e-89 335.1 656 37.7
THA.LOC104802360 Tarenaya hassleriana HOM05D006280 ORTHO05D007876 1.9e-89 334.3 655 37.4
Migut.B01331 Erythranthe guttata HOM05D006280 ORTHO05D007876 2.8e-88 330.5 716 36.9
Cc02_g27560 Coffea canephora HOM05D006280 ORTHO05D007876 1.0e-87 328.6 692 34.8
Sabra09G0047500 Salix brachista HOM05D006280 ORTHO05D007876 1.5e-86 324.7 593 40.0
FvH4_7g00721 Fragaria vesca HOM05D006280 ORTHO05D007876 3.7e-85 320.1 611 40.4
SGA_v2.0_scaffold119G32715 Striga asiatica HOM05D006280 ORTHO05D007876 1.6e-83 314.7 681 37.3
RcHm_v2.0_Chr1g0314941 Rosa chinensis HOM05D006280 ORTHO05D007876 1.0e-82 312.0 597 41.2
FAN10G1835 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.3e-82 310.8 607 39.9
Potri.009G064200 Populus trichocarpa HOM05D006280 ORTHO05D007876 3.0e-82 310.5 591 40.1
Oeu039119.3 Olea europaea HOM05D006280 ORTHO05D007876 5.6e-81 306.2 720 37.1
HanXRQChr16g0519571 Helianthus annuus HOM05D006280 ORTHO05D007876 9.5e-81 305.4 657 35.3
Lsat_1_v5_gn_4_46080 Lactuca sativa HOM05D006280 ORTHO05D007876 1.6e-80 304.7 669 35.3
Manes.10G146200 Manihot esculenta HOM05D006280 ORTHO05D007876 2.8e-80 303.9 647 36.5
EL10Ac6g13519 Beta vulgaris HOM05D006280 ORTHO05D007876 1.4e-79 301.6 691 33.7
Solyc01g086930.4 Solanum lycopersicum HOM05D006280 ORTHO05D007876 1.4e-79 301.6 642 34.7
AL5G32680 Arabidopsis lyrata HOM05D006280 ORTHO05D007876 1.8e-79 301.2 636 37.9
AUR62028915 Chenopodium quinoa HOM05D006280 ORTHO05D007876 3.1e-79 300.4 632 34.3
Aqoxy2G00116 Aquilegia oxysepala HOM05D006280 ORTHO05D007876 1.2e-78 298.5 612 36.8
QL04p005267 Quercus lobata HOM05D006280 ORTHO05D007876 6.4e-77 292.7 578 38.6
Carub.0005s1845 Capsella rubella HOM05D006280 ORTHO05D007876 1.6e-75 288.1 645 35.0
AT3G52115 Arabidopsis thaliana HOM05D006280 ORTHO05D007876 2.7e-75 287.3 633 35.5
MD07G1006900 Malus domestica HOM05D006280 ORTHO05D007876 1.0e-74 285.4 492 41.9
Sp5g10170 Schrenkiella parvula HOM05D006280 ORTHO05D007876 7.3e-73 279.3 621 37.7
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 9.5e-73 278.9 551 39.7
Dinv09375 Davidia involucrata HOM05D006280 ORTHO05D007876 1.2e-72 278.5 306 53.6
PSO447G0216 Papaver somniferum HOM05D006280 ORTHO05D007876 3.6e-72 276.9 611 35.2
Hma1.2p1_0845F.1_g227480 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 6.2e-72 276.2 543 37.9
Lalb_Chr03g0033951 Lupinus albus HOM05D006280 ORTHO05D007876 8.1e-72 275.8 633 34.6
FAN01G3121 Fragaria x ananassa HOM05D006280 ORTHO05D007876 2.2e-69 267.7 673 38.5
Thhalv10010216m.g Eutrema salsugineum HOM05D006280 ORTHO05D007876 6.4e-69 266.2 640 35.9
Nn2g15492 Nelumbo nucifera HOM05D006280 ORTHO05D007876 7.1e-68 262.7 720 32.2
AUR62005634 Chenopodium quinoa HOM05D006280 ORTHO05D007876 1.3e-66 258.5 583 32.8
MBI01_g40597_MAGBIO Magnolia biondii HOM05D006280 ORTHO05D007876 1.7e-66 258.1 617 35.7
CARHR161840 Cardamine hirsuta HOM05D006280 ORTHO05D007876 2.3e-66 257.7 640 35.2
ECA234G4003 Erigeron canadensis HOM05D006280 ORTHO05D007876 2.3e-66 257.7 658 33.6
BcaB02g08586 Brassica carinata HOM05D006280 ORTHO05D007876 6.6e-66 256.1 628 33.8
A04p07250 Brassica napus HOM05D006280 ORTHO05D007876 5.8e-62 243.0 599 36.2
BraA04t16420Z Brassica rapa HOM05D006280 ORTHO05D007876 5.8e-62 243.0 599 36.2
Ca_23874_v3 Cicer arietinum L. HOM05D006280 ORTHO05D007876 5.4e-60 236.5 616 32.1
C04p40810 Brassica napus HOM05D006280 ORTHO05D007876 3.5e-59 233.8 616 35.7
BolC4t25665H Brassica oleracea HOM05D006280 ORTHO05D007876 3.5e-59 233.8 616 35.7
BcaC02g09279 Brassica carinata HOM05D006280 ORTHO05D007876 1.0e-58 232.3 604 36.1
FAN01G1556 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.7e-58 231.5 392 44.1
Dinv14267 Davidia involucrata HOM05D006280 ORTHO05D007876 1.5e-57 228.4 464 39.0
Psat4g148560 Pisum sativum HOM05D006280 ORTHO05D007876 4.3e-57 226.9 626 32.1
Lj3g0014839 Lotus japonicus HOM05D006280 ORTHO05D007876 6.2e-56 223.0 665 30.7
Dinv09374 Davidia involucrata HOM05D006280 ORTHO05D007876 1.4e-55 221.9 340 45.6
PSO210G6454 Papaver somniferum HOM05D006280 ORTHO05D007876 7.6e-54 216.1 309 42.7
Os06g0613400 Oryza sativa ssp. japonica HOM05D006280 ORTHO05D007876 2.9e-53 214.2 614 31.4
TPR.G21742 Trifolium pratense HOM05D006280 ORTHO05D007876 1.1e-52 212.2 614 31.3
Rhsim01G0130600 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.4e-52 211.8 460 36.5
Zm00001eb388310 Zea mays HOM05D006280 ORTHO05D007876 5.4e-52 209.9 619 30.4
ATR0824G264 Amborella trichopoda HOM05D006280 ORTHO05D007876 3.0e-50 204.1 687 30.4
Glyma.12G238500 Glycine max HOM05D006280 ORTHO05D007876 5.1e-50 203.4 621 33.0
VMungo1127G1733 Vigna mungo HOM05D006280 ORTHO05D007876 6.6e-50 203.0 628 29.8
TAR636G0096 Trochodendron aralioides HOM05D006280 ORTHO05D007876 1.6e-48 198.4 271 47.2
arahy.Tifrunner.gnm1.ann1.JHR7K6 Arachis hypogaea HOM05D006280 ORTHO05D007876 2.1e-48 198.0 634 28.9
Rhsim01G0130700 Rhododendron simsii HOM05D006280 ORTHO05D007876 1.8e-47 194.9 240 47.1
Medtr8g036940 Medicago truncatula HOM05D006280 ORTHO05D007876 5.8e-46 189.9 606 31.7
Glyma.13G204200 Glycine max HOM05D006280 ORTHO05D007876 1.6e-43 181.8 235 46.0
arahy.Tifrunner.gnm1.ann1.0Y513H Arachis hypogaea HOM05D006280 ORTHO05D007876 2.1e-40 171.4 595 31.1
Phvul.011G212200 Phaseolus vulgaris HOM05D006280 ORTHO05D007876 4.8e-40 170.2 611 29.8
CDE04G2764 Ceratophyllum demersum HOM05D006280 ORTHO05D007876 3.5e-35 154.1 196 44.9
vmacro21180 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 3.0e-34 151.0 390 35.1
vmacro21179 Vaccinium macrocarpon HOM05D006280 ORTHO05D007876 1.9e-33 148.3 145 57.2
TAR636G3118 Trochodendron aralioides HOM05D006280 ORTHO05D007876 2.5e-33 147.9 281 38.4
Hma1.2p1_0312F.1_g121350 Hydrangea macrophylla HOM05D006280 ORTHO05D007876 4.3e-33 147.1 176 48.3
Dinv14268 Davidia involucrata HOM05D006280 ORTHO05D007876 6.2e-32 143.3 130 57.7
SEGI_32119 Sequoiadendron giganteum HOM05D006280 ORTHO05D007876 1.4e-31 142.1 684 25.3
unitig_8.g3859 Utricularia gibba HOM05D006280 ORTHO05D007876 9.0e-31 139.4 519 28.7
Manes.07G004300 Manihot esculenta HOM05D006280 ORTHO05D007876 7.1e-28 129.8 227 37.0
MSTRG.5009 Avicennia marina HOM05D006280 ORTHO05D007876 9.4e-20 102.8 370 27.8
SMO196G0201 Selaginella moellendorffii HOM05D006280 ORTHO05D007876 1.6e-19 102.1 338 30.5
unitig_8.g3860 Utricularia gibba HOM05D006280 ORTHO05D007876 3.6e-19 100.9 141 48.2
QL04p005379 Quercus lobata HOM05D000011 ORTHO05D007876 7.9e-19 99.8 227 37.0
QL04p005302 Quercus lobata HOM05D006280 ORTHO05D007876 1.0e-18 99.4 200 37.5
Mapoly0001s0083 Marchantia polymorpha HOM05D006280 ORTHO05D007876 1.1e-17 95.9 80 56.2
AagrBONN_evm.TU.Sc2ySwM_117.1753 Anthoceros agrestis HOM05D006280 ORTHO05D007876 2.0e-17 95.1 81 53.1
Pp3c16_2140 Physcomitrium patens HOM05D006280 ORTHO05D007876 5.3e-15 87.0 79 54.4
PSO210G6643 Papaver somniferum HOM05D006280 ORTHO05D007876 2.0e-14 85.1 173 39.3
DCAR_006240 Daucus carota HOM05D006280 ORTHO05D007876 2.2e-13 81.6 216 30.6
MCO05G132 Micromonas commoda HOM05D006280 ORTHO05D007876 1.5e-06 58.9 78 35.9
HPP92_006144 Vanilla planifolia HOM05D002569 ORTHO05D006728 2.0e-06 58.5 202 26.7


User provided reference genes

Program Settings