Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.9e-167 592.4 294 100.0
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 5.7e-116 421.4 293 74.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.1e-114 415.6 293 72.7
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 7.7e-113 411.0 293 72.0
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 1.1e-106 390.6 292 68.2
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.4e-106 390.2 292 67.5
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.4e-106 389.4 292 68.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 4.1e-106 388.7 292 67.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 7.0e-106 387.9 292 66.1
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 9.2e-106 387.5 292 66.4
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.2e-105 387.1 292 67.1
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.0e-105 386.3 292 66.8
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.0e-105 386.3 292 67.5
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.7e-105 386.0 292 66.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 2.7e-105 386.0 293 66.6
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.7e-105 386.0 292 67.1
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 3.5e-105 385.6 292 66.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.5e-105 385.6 292 67.5
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 3.5e-105 385.6 292 67.5
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 4.5e-105 385.2 292 66.4
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 4.5e-105 385.2 292 66.8
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 5.9e-105 384.8 275 71.6
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 5.9e-105 384.8 292 66.1
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.0e-104 384.0 292 65.8
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.3e-104 383.6 292 66.4
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.7e-104 383.3 292 67.1
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 2.3e-104 382.9 293 65.5
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.8e-104 382.1 293 65.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.0e-104 381.7 292 66.8
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.0e-104 381.7 292 65.1
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 6.6e-104 381.3 292 64.4
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 6.6e-104 381.3 292 65.1
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.6e-104 380.9 292 65.4
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.1e-103 380.6 292 65.1
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 1.5e-103 380.2 292 64.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 1.9e-103 379.8 292 65.4
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.9e-103 379.8 292 65.4
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.5e-103 379.4 292 65.4
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 2.5e-103 379.4 292 65.4
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.5e-103 379.4 292 65.4
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 4.3e-103 378.6 292 65.4
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 5.6e-103 378.3 292 64.7
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 5.6e-103 378.3 292 64.7
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 5.6e-103 378.3 293 64.2
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 9.5e-103 377.5 292 65.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 9.5e-103 377.5 293 65.9
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 9.5e-103 377.5 292 65.1
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 9.5e-103 377.5 292 65.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.2e-102 377.1 292 64.0
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.6e-102 376.7 292 64.4
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.8e-102 375.9 292 67.1
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.8e-102 375.9 292 65.1
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.6e-102 375.6 292 65.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 6.1e-102 374.8 292 65.1
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 6.1e-102 374.8 293 64.8
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 8.0e-102 374.4 292 64.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.0e-101 374.0 296 64.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.8e-101 373.2 326 60.4
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 1.8e-101 373.2 292 64.0
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 2.3e-101 372.9 292 64.0
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 2.3e-101 372.9 292 65.4
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.3e-101 372.9 292 63.4
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.0e-101 372.1 326 60.4
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.0e-101 372.1 308 61.0
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 5.2e-101 371.7 292 63.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.2e-100 370.5 292 64.4
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.6e-100 369.4 292 63.0
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 4.4e-100 368.6 309 61.8
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 4.4e-100 368.6 292 63.0
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 5.7e-100 368.2 292 64.4
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 5.7e-100 368.2 292 62.3
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 7.5e-100 367.9 292 64.4
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 9.8e-100 367.5 292 63.4
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.7e-99 366.7 292 62.3
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.7e-99 366.7 292 63.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 2.2e-99 366.3 325 59.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.2e-99 366.3 292 62.0
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-99 365.9 292 62.0
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 3.7e-99 365.5 292 61.6
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 4.9e-99 365.2 293 62.8
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 4.9e-99 365.2 292 63.0
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 6.4e-99 364.8 292 61.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 6.4e-99 364.8 292 61.6
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 8.3e-99 364.4 292 62.3
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.1e-98 364.0 292 61.6
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 1.8e-98 363.2 292 62.3
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 1.8e-98 363.2 292 61.6
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.8e-98 363.2 292 63.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.2e-98 362.5 292 61.0
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 4.1e-98 362.1 292 61.3
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.4e-98 361.7 292 62.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 9.2e-98 360.9 292 61.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 9.2e-98 360.9 292 62.3
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 9.2e-98 360.9 262 69.8
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.0e-97 359.8 292 61.6
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.7e-97 359.4 292 61.0
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 7.8e-97 357.8 292 63.0
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.0e-96 357.5 292 61.6
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.3e-96 357.1 292 61.3
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 5.0e-96 355.1 314 59.9
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 6.6e-96 354.8 293 61.1
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.5e-95 353.6 292 61.3
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 4.3e-95 352.1 293 60.4
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 5.6e-95 351.7 342 55.3
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.6e-94 350.1 313 57.8
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 1.4e-93 347.1 277 64.6
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.3e-93 346.3 293 58.0
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 9.8e-92 340.9 342 53.8
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.3e-91 340.5 293 58.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.7e-91 339.0 292 57.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.4e-90 337.0 299 60.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 4.1e-90 335.5 293 57.7
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 9.2e-90 334.3 275 60.7
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 7.8e-89 331.3 293 58.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 5.0e-88 328.6 292 58.2
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 2.6e-84 316.2 292 56.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 4.4e-84 315.5 231 65.8
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 9.8e-84 314.3 292 55.1
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-82 310.8 299 54.8
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.1e-82 310.8 299 54.8
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.1e-81 306.6 292 55.1
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.3e-80 303.9 264 58.7
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.5e-79 300.4 193 75.1
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.2e-78 297.4 193 74.1
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 2.3e-77 293.1 292 53.1
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-74 284.3 220 67.3
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-74 284.3 220 67.3
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 4.1e-74 282.3 220 66.8
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 3.1e-69 266.2 207 67.6
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 8.4e-67 258.1 213 64.3
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 1.9e-50 203.8 121 81.8
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 7.9e-49 198.4 161 62.1
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.3e-46 191.0 165 63.0
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 1.0e-35 154.8 122 57.4
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.3e-35 154.5 305 30.8
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 5.5e-34 149.1 161 50.3
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.1e-33 147.1 112 58.9
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 7.9e-33 145.2 112 65.2
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 5.1e-32 142.5 122 62.3
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.1e-31 141.4 289 29.8
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 5.7e-31 139.0 294 30.3
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.6e-28 130.2 80 73.8
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.4e-28 129.8 183 44.8
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 2.2e-27 127.1 221 36.2
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 3.3e-23 113.2 160 37.5
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.7e-22 109.8 66 80.3
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.0e-19 101.7 73 68.5
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.0e-19 101.7 73 68.5
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 5.5e-18 95.9 71 64.8
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 9.4e-18 95.1 73 64.4
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 4.1e-13 79.7 56 69.6
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.7e-11 74.3 255 26.7
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 3.2e-10 70.1 37 81.1
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 7.2e-10 68.9 47 66.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.7e-09 67.0 264 25.8
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 8.0e-09 65.5 43 69.8
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.0e-08 65.1 233 26.6
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.4e-08 64.7 43 69.8
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 5.7e-07 59.3 30 86.7


User provided reference genes

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