Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 2.6e-187 658.7 365 100.0
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 4.6e-139 498.4 322 82.9
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 7.8e-139 497.7 322 83.5
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 2.3e-138 496.1 322 82.9
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 1.3e-130 470.3 310 80.6
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 1.0e-122 444.1 319 74.6
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.8e-120 435.3 318 74.2
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 6.9e-119 431.4 360 69.2
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 2.0e-118 429.9 325 71.7
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 4.4e-118 428.7 315 73.3
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 7.6e-118 427.9 325 71.7
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 1.3e-117 427.2 325 71.4
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 1.7e-117 426.8 312 72.4
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 2.2e-117 426.4 311 74.3
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 2.9e-117 426.0 323 70.3
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 3.8e-117 425.6 367 65.9
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 4.9e-117 425.2 318 71.7
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 4.9e-117 425.2 366 66.4
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 1.4e-116 423.7 319 72.7
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 5.4e-116 421.8 320 71.2
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 4.6e-115 418.7 359 69.4
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 4.6e-115 418.7 359 69.4
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 4.6e-115 418.7 379 64.6
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 5.1e-114 415.2 320 70.9
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 5.1e-114 415.2 327 70.0
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 6.6e-114 414.8 367 65.9
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 4.3e-113 412.1 321 69.2
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 5.6e-113 411.8 379 63.6
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 7.3e-113 411.4 323 69.3
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 7.3e-113 411.4 349 67.0
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 9.6e-113 411.0 375 66.4
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 1.6e-112 410.2 328 69.8
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 6.2e-112 408.3 390 65.9
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 6.2e-112 408.3 390 65.9
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 8.1e-112 407.9 379 63.3
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 1.4e-111 407.1 314 70.7
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 1.8e-111 406.8 387 62.3
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 3.1e-111 406.0 382 63.1
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 5.3e-111 405.2 399 62.9
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 6.9e-111 404.8 386 61.4
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 9.0e-111 404.4 317 67.5
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 1.2e-110 404.1 306 72.9
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 2.0e-110 403.3 363 63.9
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 4.5e-110 402.1 384 63.5
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 5.8e-110 401.7 323 67.5
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 9.9e-110 401.0 346 65.9
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 4.9e-109 398.7 285 73.3
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 4.9e-109 398.7 328 66.5
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.9e-108 396.7 281 75.1
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 4.2e-108 395.6 316 68.0
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 5.4e-108 395.2 324 64.5
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 7.1e-108 394.8 326 66.9
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 1.0e-106 391.0 380 60.5
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 1.3e-106 390.6 331 64.7
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 1.3e-106 390.6 380 61.1
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 1.8e-106 390.2 332 66.6
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 2.3e-106 389.8 388 62.4
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.0e-106 389.4 322 66.8
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 3.9e-106 389.0 320 65.3
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 1.9e-105 386.7 322 65.5
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 1.9e-105 386.7 322 65.5
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 2.5e-105 386.3 319 65.2
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.4e-105 384.8 323 66.3
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.4e-105 384.8 323 66.3
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 1.3e-104 384.0 334 64.7
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 1.6e-104 383.6 321 64.2
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 2.1e-104 383.3 321 65.1
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.1e-104 383.3 335 65.4
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 2.1e-104 383.3 409 58.9
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 2.8e-104 382.9 266 75.2
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 3.7e-104 382.5 320 65.0
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 1.4e-103 380.6 328 63.7
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 1.8e-103 380.2 366 60.4
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 3.1e-103 379.4 332 63.9
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 6.9e-103 378.3 357 61.1
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 2.0e-102 376.7 324 64.5
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 2.6e-102 376.3 328 61.6
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 2.6e-102 376.3 399 59.1
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 3.4e-102 375.9 359 61.6
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 4.5e-102 375.6 327 61.8
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 4.5e-102 375.6 330 64.8
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 2.9e-101 372.9 320 64.4
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 4.9e-101 372.1 400 58.2
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 2.5e-100 369.8 321 62.6
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 2.5e-100 369.8 266 73.3
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.0e-98 362.8 333 63.1
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 3.9e-98 362.5 329 61.7
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 6.7e-98 361.7 281 67.6
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 8.7e-98 361.3 432 54.6
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 3.3e-97 359.4 318 63.5
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 5.7e-97 358.6 322 60.6
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 2.7e-91 339.7 248 71.4
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 7.9e-91 338.2 293 63.8
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 3.3e-89 332.8 298 62.8
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.4e-89 331.6 294 63.3
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 1.3e-88 330.9 372 57.3
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 3.7e-88 329.3 239 71.5
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 3.1e-87 326.2 294 63.3
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 9.4e-84 314.7 314 55.7
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 3.9e-82 309.3 269 59.9
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 1.5e-81 307.4 269 59.1
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 2.0e-81 307.0 364 53.6
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 2.0e-81 307.0 265 61.9
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 2.6e-78 296.6 270 58.9
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 3.4e-78 296.2 413 49.2
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 1.3e-77 294.3 238 64.7
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.7e-77 293.9 227 68.7
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 8.5e-77 291.6 408 46.3
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 8.5e-77 291.6 408 46.3
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 1.0e-74 284.6 274 55.8
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 2.7e-67 260.0 354 46.0
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.4e-66 257.7 326 51.8
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 1.8e-66 257.3 358 44.4
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.5e-65 254.2 338 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 2.0e-65 253.8 263 51.0
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 8.2e-64 248.4 202 63.4
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.0e-62 243.8 205 64.9
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 1.3e-53 214.5 170 70.6
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.2e-49 201.4 244 48.0
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.5e-44 183.7 154 66.2
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 5.6e-44 182.6 221 54.3
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.6e-27 127.9 102 57.8
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 4.7e-27 126.3 93 65.6
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.2e-26 122.9 112 64.3
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 1.3e-16 91.7 62 66.1
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 2.4e-15 87.4 230 27.8
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 1.6e-14 84.7 103 55.3
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 2.7e-14 84.0 250 28.0
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.2e-09 68.6 114 37.7


User provided reference genes

Program Settings