Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.0e-143 513.8 356 100.0
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.5e-94 350.5 358 58.7
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 3.5e-75 286.2 355 52.4
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 3.4e-70 269.6 353 49.6
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 4.3e-49 199.5 121 78.5
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 7.3e-49 198.7 121 80.2
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.2e-48 198.0 120 79.2
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.7e-48 196.1 121 76.9
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 1.8e-47 194.1 355 39.2
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 6.8e-47 192.2 121 74.4
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-46 191.4 121 76.0
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-46 191.4 121 76.0
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 2.0e-46 190.7 121 76.0
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 2.6e-46 190.3 120 75.8
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 4.4e-46 189.5 120 75.8
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 5.8e-46 189.1 121 75.2
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 5.8e-46 189.1 121 75.2
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 7.6e-46 188.7 121 74.4
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.6e-46 188.7 121 75.2
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 7.6e-46 188.7 119 75.6
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 9.9e-46 188.3 123 76.4
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.7e-45 187.6 120 77.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.7e-45 187.6 118 75.4
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.9e-45 186.8 121 76.0
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.9e-45 186.8 121 76.0
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 2.9e-45 186.8 120 74.2
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 2.9e-45 186.8 120 74.2
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 3.7e-45 186.4 120 73.3
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 4.9e-45 186.0 121 73.6
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.4e-45 185.7 121 76.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 6.4e-45 185.7 121 76.0
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 6.4e-45 185.7 121 72.7
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 6.4e-45 185.7 120 73.3
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 8.4e-45 185.3 120 72.5
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.1e-44 184.9 120 70.8
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-44 184.5 121 75.2
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.4e-44 184.5 121 71.9
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.4e-44 184.5 120 72.5
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 2.4e-44 183.7 120 75.8
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 2.4e-44 183.7 121 72.7
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 2.4e-44 183.7 121 73.6
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 4.1e-44 183.0 121 69.4
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 4.1e-44 183.0 121 69.4
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 5.4e-44 182.6 121 71.9
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 7.1e-44 182.2 121 72.7
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 7.1e-44 182.2 121 72.7
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 7.1e-44 182.2 121 72.7
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.6e-43 181.0 120 70.0
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.7e-43 180.3 120 74.2
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 4.6e-43 179.5 122 70.5
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.0e-42 178.3 121 71.1
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.3e-42 177.9 121 71.1
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.3e-42 177.2 121 71.1
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 5.1e-42 176.0 121 70.2
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 6.6e-42 175.6 121 70.2
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.5e-41 174.5 121 66.1
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 2.5e-41 173.7 121 66.9
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 3.3e-41 173.3 121 65.3
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 5.6e-41 172.6 121 66.1
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 5.6e-41 172.6 121 66.1
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 5.6e-41 172.6 121 66.1
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 5.6e-41 172.6 121 66.1
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 5.6e-41 172.6 121 66.1
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 7.3e-41 172.2 121 68.6
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 9.6e-41 171.8 121 65.3
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 9.6e-41 171.8 121 69.4
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 9.6e-41 171.8 121 65.3
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.2e-40 171.4 121 65.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 2.1e-40 170.6 121 70.2
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.8e-40 170.2 121 68.6
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.6e-40 169.9 122 65.6
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 3.6e-40 169.9 122 65.6
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 4.7e-40 169.5 121 66.1
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 8.1e-40 168.7 122 64.8
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.4e-39 167.9 120 70.0
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.4e-39 167.2 121 62.8
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 4.0e-39 166.4 121 71.1
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 8.9e-39 165.2 125 68.8
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.9e-39 165.2 121 65.3
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.9e-39 165.2 121 65.3
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.0e-38 164.1 121 64.5
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 7.6e-38 162.2 121 66.9
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 7.6e-38 162.2 121 66.9
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 7.6e-38 162.2 121 66.9
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.7e-37 161.0 121 63.6
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 3.2e-36 156.8 121 62.0
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.2e-35 154.8 119 63.9
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.6e-35 154.5 123 63.4
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.1e-35 154.1 110 63.6
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 6.0e-35 152.5 119 63.0
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 7.8e-35 152.1 121 62.0
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 7.8e-35 152.1 121 60.3
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 7.8e-35 152.1 119 63.0
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-34 151.8 126 60.3
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.0e-34 151.8 126 60.3
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 1.3e-34 151.4 93 76.3
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.3e-34 150.6 121 57.9
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 3.9e-34 149.8 121 59.5
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 4.3e-33 146.4 122 63.9
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 7.3e-33 145.6 121 60.3
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.6e-32 144.4 121 61.2
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 2.4e-31 140.6 121 55.4
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 6.9e-31 139.0 102 62.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 3.4e-30 136.7 104 62.5
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 5.8e-30 136.0 121 56.2
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.7e-29 134.4 110 62.7
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.6e-27 127.9 106 60.4
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.3e-26 124.8 99 62.6
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.8e-26 124.4 102 60.8
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 5.6e-25 119.4 88 65.9
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.1e-24 117.5 95 60.0
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.4e-23 114.8 99 59.6
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 1.4e-23 114.8 80 63.8
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 9.0e-23 112.1 80 67.5
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 4.8e-16 89.7 72 62.5
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 1.8e-15 87.8 68 66.2
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 1.8e-15 87.8 104 59.6
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.4e-15 87.4 60 71.7
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 5.8e-14 82.8 69 55.1
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 3.5e-11 73.6 120 35.8
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 7.9e-11 72.4 121 38.8
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 8.7e-10 68.9 46 65.2
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 1.4e-07 61.6 121 38.8
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.5e-06 58.2 65 41.5
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.5e-06 58.2 65 41.5
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 2.0e-06 57.8 65 41.5
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 2.6e-06 57.4 65 41.5


User provided reference genes

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