Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 2.0e-74 282.3 145 100.0
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 8.9e-54 213.8 158 76.6
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 6.4e-52 207.6 158 72.8
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 1.1e-51 206.8 158 72.8
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 3.6e-47 191.8 151 70.2
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 1.1e-46 190.3 151 68.9
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 5.2e-46 188.0 157 66.2
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 3.4e-45 185.3 157 66.2
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 9.9e-45 183.7 157 63.7
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.3e-44 183.3 157 64.3
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 1.3e-44 183.3 157 66.2
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.7e-44 183.0 157 64.3
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 2.9e-44 182.2 157 63.7
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 2.9e-44 182.2 157 65.0
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 2.9e-44 182.2 157 63.7
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 2.9e-44 182.2 148 67.6
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.8e-44 181.8 157 65.0
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 4.9e-44 181.4 157 63.1
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 4.9e-44 181.4 157 63.7
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 4.9e-44 181.4 157 65.0
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-43 180.3 157 64.3
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.1e-43 180.3 157 64.3
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 1.1e-43 180.3 157 64.3
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 1.1e-43 180.3 157 64.3
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 2.4e-43 179.1 157 63.1
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 2.4e-43 179.1 151 64.9
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 2.4e-43 179.1 157 63.1
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 4.2e-43 178.3 157 63.7
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 4.2e-43 178.3 157 64.3
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 4.2e-43 178.3 165 61.2
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 9.3e-43 177.2 157 63.7
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 9.3e-43 177.2 157 63.7
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 1.2e-42 176.8 157 62.4
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 1.6e-42 176.4 157 62.4
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 1.6e-42 176.4 157 63.7
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 2.1e-42 176.0 157 63.7
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 2.1e-42 176.0 157 61.8
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 3.5e-42 175.3 167 59.3
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 4.6e-42 174.9 157 62.4
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 6.0e-42 174.5 157 63.1
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 7.8e-42 174.1 157 63.7
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 7.8e-42 174.1 157 61.8
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 7.8e-42 174.1 157 62.4
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 1.3e-41 173.3 167 58.7
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 1.7e-41 172.9 157 60.5
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 1.7e-41 172.9 157 63.1
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 2.3e-41 172.6 157 61.8
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 2.3e-41 172.6 157 63.7
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 2.3e-41 172.6 157 59.9
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 3.0e-41 172.2 157 63.1
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 3.0e-41 172.2 157 61.8
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 5.1e-41 171.4 157 61.1
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 5.1e-41 171.4 157 61.1
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 6.6e-41 171.0 157 61.8
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 8.7e-41 170.6 157 62.4
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 8.7e-41 170.6 148 64.2
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 1.1e-40 170.2 157 59.9
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.1e-40 170.2 157 60.5
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.9e-40 169.5 157 60.5
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.5e-40 169.1 154 63.0
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 2.5e-40 169.1 157 59.9
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 3.3e-40 168.7 157 59.9
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 3.3e-40 168.7 157 59.9
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 3.3e-40 168.7 157 63.7
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 4.3e-40 168.3 157 59.9
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 4.3e-40 168.3 157 59.9
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 4.3e-40 168.3 157 59.9
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 4.3e-40 168.3 157 61.1
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.6e-40 167.9 157 59.2
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 7.3e-40 167.5 157 59.2
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 7.3e-40 167.5 157 61.8
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 9.6e-40 167.2 157 59.2
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.3e-39 166.8 157 59.2
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 1.3e-39 166.8 157 59.2
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 1.3e-39 166.8 157 59.2
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 1.3e-39 166.8 157 63.1
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.6e-39 166.4 157 61.1
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 1.6e-39 166.4 157 62.4
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 2.1e-39 166.0 157 59.9
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 2.1e-39 166.0 157 58.6
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 2.1e-39 166.0 157 58.6
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 2.1e-39 166.0 157 62.4
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 2.8e-39 165.6 157 61.1
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 3.6e-39 165.2 157 58.6
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 3.6e-39 165.2 157 58.6
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 4.8e-39 164.9 157 61.1
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 4.8e-39 164.9 157 58.6
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 4.8e-39 164.9 157 58.6
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 6.2e-39 164.5 157 58.6
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 1.1e-38 163.7 153 61.4
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.4e-38 163.3 157 61.1
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.4e-38 163.3 157 61.1
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 1.8e-38 162.9 157 58.6
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.8e-38 162.9 157 58.6
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 5.3e-38 161.4 157 58.6
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.3e-38 161.4 157 58.6
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 6.9e-38 161.0 157 58.0
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 9.0e-38 160.6 157 56.7
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 1.5e-37 159.8 157 56.7
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.0e-37 159.5 157 58.6
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 2.6e-37 159.1 157 56.7
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 2.6e-37 159.1 159 59.1
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 4.5e-37 158.3 202 49.0
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 7.6e-37 157.5 159 56.0
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 9.9e-37 157.1 185 51.4
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 2.2e-36 156.0 157 57.3
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 8.4e-36 154.1 163 56.4
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 8.4e-36 154.1 139 63.3
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 8.4e-36 154.1 157 56.1
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 8.4e-36 154.1 115 70.4
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 1.4e-35 153.3 178 53.9
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 4.2e-35 151.8 144 58.3
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 7.1e-35 151.0 115 67.8
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 1.6e-34 149.8 148 58.1
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 3.5e-34 148.7 115 67.8
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 6.0e-34 147.9 157 53.5
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.3e-33 146.7 111 69.4
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.8e-33 146.4 157 54.1
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 1.8e-33 146.4 157 52.2
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 2.3e-33 146.0 156 57.1
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 3.0e-33 145.6 157 50.3
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 3.9e-33 145.2 158 54.4
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 1.1e-32 143.7 157 51.0
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 1.5e-32 143.3 157 51.0
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 1.5e-32 143.3 157 49.7
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.9e-32 142.9 167 53.3
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.9e-32 142.9 156 51.9
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 4.3e-32 141.7 157 51.0
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 4.8e-31 138.3 147 59.2
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 8.1e-31 137.5 90 83.3
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 6.9e-30 134.4 157 49.7
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 9.9e-29 130.6 157 49.0
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 1.7e-28 129.8 158 48.7
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 1.7e-28 129.8 159 52.2
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 4.9e-28 128.3 104 64.4
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 2.4e-27 125.9 157 46.5
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 1.6e-26 123.2 159 45.9
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 3.5e-26 122.1 158 46.2
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 1.9e-24 116.3 97 63.9
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 3.3e-24 115.5 99 63.6
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 5.6e-24 114.8 96 66.7
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 2.1e-23 112.8 97 62.9
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 4.8e-23 111.7 155 42.6
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.2e-21 107.1 106 59.4
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 1.3e-20 103.6 98 65.3
SEGI_34284 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 1.3e-20 103.6 99 58.6
Rhsim05G0177800 Rhododendron simsii HOM05D003159 ORTHO05D000029 2.2e-20 102.8 145 43.4
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 8.4e-20 100.9 148 45.9
arahy.Tifrunner.gnm1.ann1.I3FRE1 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.6e-18 96.7 98 54.1
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 5.7e-16 88.2 91 57.1
Ciclev10021626m.g Citrus clementina HOM05D003159 ORTHO05D003780 3.7e-15 85.5 145 41.4
Sabra13G0039800 Salix brachista HOM05D003159 ORTHO05D003780 9.0e-14 80.9 56 66.1
Lalb_Chr06g0166701 Lupinus albus HOM05D003159 ORTHO05D003780 4.5e-13 78.6 53 66.0
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.3e-12 77.0 135 44.4
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.9e-12 75.9 131 44.3
arahy.Tifrunner.gnm1.ann1.EY0MZ8 Arachis hypogaea HOM05D000422 ORTHO05D010939 1.4e-11 73.6 97 40.2
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 2.5e-11 72.8 122 45.1
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 4.6e-10 68.6 136 41.9
BcaC04g20281 Brassica carinata HOM05D003159 ORTHO05D003780 1.4e-09 67.0 73 52.1
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 3.9e-09 65.5 64 54.7
Lalb_Chr06g0166731 Lupinus albus HOM05D003159 ORTHO05D003780 3.9e-09 65.5 81 45.7
BolC9t57426H Brassica oleracea HOM05D003159 ORTHO05D003780 1.3e-07 60.5 73 50.7
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.3e-07 60.5 105 44.8
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 1.7e-07 60.1 117 35.9


User provided reference genes

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