Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 4.3e-217 757.7 373 100.0
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 8.7e-194 680.2 369 90.0
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.2e-190 669.8 372 89.8
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 5.1e-186 654.4 371 86.0
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.5e-185 652.1 371 86.3
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 9.4e-156 553.9 362 74.0
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.5e-153 546.6 364 72.5
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 2.6e-150 535.8 376 70.5
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 7.7e-150 534.3 364 71.4
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.0e-149 533.9 374 70.6
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 5.0e-149 531.6 368 69.8
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 3.0e-146 522.3 364 70.9
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 5.2e-146 521.5 376 68.1
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.8e-143 513.1 372 68.5
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 2.4e-143 512.7 370 68.1
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.1e-143 511.9 368 67.7
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.1e-143 511.9 364 67.9
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 7.0e-143 511.1 364 68.1
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.2e-142 510.4 368 67.4
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 4.5e-142 508.4 337 73.9
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 7.7e-142 507.7 368 68.5
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.3e-141 506.9 362 67.7
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.5e-140 503.4 362 67.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 2.5e-140 502.7 366 66.7
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.2e-140 501.1 368 65.5
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.2e-139 500.4 345 71.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.6e-139 498.8 363 66.4
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 3.6e-139 498.8 363 66.4
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.6e-139 498.8 363 67.2
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-138 496.5 366 65.8
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.2e-137 493.8 343 69.4
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.4e-137 491.9 364 68.1
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 4.4e-137 491.9 357 67.5
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.7e-136 490.0 327 71.6
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.7e-136 488.8 330 69.7
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.1e-135 487.3 377 65.5
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.4e-135 486.1 377 63.7
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.4e-135 486.1 377 66.0
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.4e-135 486.1 377 65.3
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.1e-135 485.7 371 65.5
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 4.1e-135 485.3 365 66.0
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 4.1e-135 485.3 337 70.6
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.2e-134 483.8 337 70.9
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 2.0e-134 483.0 362 64.9
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 8.5e-133 477.6 370 64.3
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.1e-132 477.2 345 67.2
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.2e-132 475.7 368 63.6
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.2e-132 475.7 357 66.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.2e-132 475.3 329 68.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.0e-130 470.7 284 79.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 3.0e-130 469.2 366 63.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 3.0e-130 469.2 359 64.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.0e-130 468.8 414 58.2
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 8.8e-130 467.6 430 56.7
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.5e-129 466.8 343 64.1
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 3.4e-129 465.7 368 62.8
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 4.1e-127 458.8 362 61.9
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 9.1e-127 457.6 304 70.1
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 1.2e-126 457.2 345 64.3
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.7e-126 454.5 374 62.6
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 2.3e-125 453.0 343 64.4
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.9e-125 452.6 284 74.6
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.5e-124 450.3 364 60.4
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 5.5e-124 448.4 343 64.4
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 8.0e-123 444.5 329 66.9
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.9e-122 441.0 364 60.4
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 4.4e-121 438.7 363 60.3
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 4.4e-121 438.7 351 63.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.3e-120 437.2 367 58.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 4.9e-120 435.3 343 63.6
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.1e-119 434.1 354 59.3
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 7.0e-119 431.4 289 69.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 1.6e-118 430.3 364 57.7
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.5e-118 428.7 379 58.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.8e-118 427.9 288 71.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.3e-117 426.4 345 61.7
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.1e-116 424.1 283 71.0
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.5e-116 422.9 338 61.8
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 3.3e-116 422.5 365 57.0
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 7.3e-116 421.4 358 60.9
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.6e-115 420.2 312 63.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.1e-115 419.9 367 56.4
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 2.8e-115 419.5 299 68.6
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 4.7e-115 418.7 298 69.1
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.1e-115 418.3 373 59.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.1e-115 418.3 299 68.2
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.8e-114 416.8 337 64.4
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.8e-114 416.8 337 63.8
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.8e-114 416.8 354 60.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-114 416.8 299 67.9
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.0e-114 415.6 299 67.6
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 8.9e-114 414.5 363 59.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 1.2e-113 414.1 374 56.7
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.2e-113 414.1 315 62.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.0e-113 413.3 317 66.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 2.6e-113 412.9 373 59.2
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 5.7e-113 411.8 371 56.3
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.7e-113 411.8 299 67.2
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 5.7e-113 411.8 355 60.8
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.3e-112 410.6 289 66.1
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.2e-112 409.8 334 60.2
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.9e-112 409.5 319 62.4
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.9e-112 409.5 289 66.4
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.9e-112 409.5 375 57.1
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.4e-111 407.1 370 56.8
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.8e-111 406.8 291 68.7
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.8e-111 406.8 283 69.3
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-111 406.0 346 59.5
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 3.2e-111 406.0 358 58.9
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-111 406.0 358 58.9
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 3.2e-111 406.0 358 58.9
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.2e-111 406.0 370 56.5
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 4.1e-111 405.6 370 56.2
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 9.2e-111 404.4 281 69.4
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 9.2e-111 404.4 333 60.1
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.6e-110 403.7 367 56.4
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-110 403.7 340 60.0
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 2.0e-110 403.3 340 60.0
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.7e-110 402.9 289 67.8
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.7e-110 402.9 291 68.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 4.6e-110 402.1 298 67.8
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.0e-109 401.0 318 63.2
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.7e-109 400.2 313 59.7
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 5.0e-109 398.7 313 59.7
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 5.0e-109 398.7 313 59.7
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 8.6e-109 397.9 289 63.3
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 8.6e-109 397.9 396 52.8
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 8.6e-109 397.9 291 65.3
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 6.2e-107 391.7 339 58.1
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.1e-106 391.0 284 66.9
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 1.4e-106 390.6 390 54.6
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.4e-106 390.6 371 56.6
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.0e-106 389.0 289 64.0
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 8.9e-106 387.9 313 59.1
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 8.9e-106 387.9 313 60.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 7.5e-105 384.8 289 65.7
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.2e-104 383.3 289 63.0
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 4.6e-102 375.6 339 56.6
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 6.8e-98 361.7 261 65.1
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 9.9e-97 357.8 512 43.4
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.3e-96 357.5 202 83.2
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.9e-92 343.6 287 57.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.6e-89 333.2 290 58.6
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.6e-89 333.2 287 54.7
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.0e-85 319.7 258 62.4
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 1.1e-84 317.8 287 54.4
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 3.4e-81 306.2 307 53.1
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 4.6e-78 295.8 202 68.8
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 1.0e-77 294.7 276 55.8
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-74 283.9 230 63.5
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 2.9e-72 276.6 250 57.2
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 2.4e-63 246.9 232 54.7
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 4.5e-57 226.1 294 42.9
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.7e-45 185.7 103 81.6
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.2e-40 170.6 105 71.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 2.1e-38 164.1 350 34.6
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-35 153.7 152 50.0
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 7.7e-33 145.6 164 48.2
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.3e-29 134.0 101 63.4
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.0e-24 118.6 295 32.5
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.0e-21 108.6 113 51.3
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 5.7e-20 102.8 230 32.6
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.7e-17 94.0 201 31.3
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.1e-10 70.1 81 51.9
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.6e-09 68.2 47 66.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 6.6e-08 62.8 242 27.7
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 3.3e-07 60.5 36 75.0


User provided reference genes

Program Settings