Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 5.3e-75 284.3 144 100.0
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 3.0e-70 268.5 144 93.8
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 2.6e-69 265.4 144 93.8
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 3.1e-67 258.5 142 90.8
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 7.0e-67 257.3 142 89.4
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.3e-65 253.1 144 91.0
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.7e-65 252.7 142 88.7
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 2.3e-65 252.3 142 87.3
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 5.0e-65 251.1 142 88.0
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.9e-64 249.2 132 95.5
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 2.5e-64 248.8 132 96.2
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 2.5e-64 248.8 143 88.8
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 3.3e-64 248.4 142 85.9
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 3.3e-64 248.4 142 85.9
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 5.5e-64 247.7 142 88.7
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 5.5e-64 247.7 144 88.9
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 7.2e-64 247.3 142 88.0
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.6e-63 246.1 142 86.6
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 2.1e-63 245.7 142 86.6
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 2.8e-63 245.4 142 86.6
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 4.7e-63 244.6 142 85.2
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 4.7e-63 244.6 143 86.0
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 6.1e-63 244.2 143 86.7
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 8.0e-63 243.8 142 87.3
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 1.8e-62 242.7 203 68.5
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 1.8e-62 242.7 142 87.3
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 1.8e-62 242.7 142 88.7
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.3e-62 242.3 143 86.0
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 2.3e-62 242.3 143 86.0
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 2.3e-62 242.3 143 86.7
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.3e-62 242.3 142 88.0
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 3.0e-62 241.9 142 84.5
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 3.0e-62 241.9 143 86.0
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 3.0e-62 241.9 155 80.0
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 5.2e-62 241.1 142 88.7
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 6.8e-62 240.7 142 84.5
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 6.8e-62 240.7 142 85.2
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 6.8e-62 240.7 140 85.7
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 1.2e-61 240.0 144 85.4
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 1.2e-61 240.0 142 85.9
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 1.5e-61 239.6 144 85.4
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 2.6e-61 238.8 142 86.6
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 2.6e-61 238.8 144 86.1
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 4.4e-61 238.0 142 85.9
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 5.7e-61 237.7 142 85.9
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 5.7e-61 237.7 142 85.9
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 1.7e-60 236.1 143 83.9
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 1.7e-60 236.1 143 83.9
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 1.7e-60 236.1 142 84.5
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 2.2e-60 235.7 142 83.8
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 2.8e-60 235.3 143 83.2
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 3.7e-60 235.0 143 83.2
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 6.3e-60 234.2 143 82.5
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 8.3e-60 233.8 141 83.7
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 8.3e-60 233.8 142 83.1
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 1.1e-59 233.4 143 83.2
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 2.4e-59 232.3 143 82.5
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 3.1e-59 231.9 143 81.8
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 3.1e-59 231.9 132 87.1
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 4.1e-59 231.5 143 81.8
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 5.4e-59 231.1 143 84.6
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 5.4e-59 231.1 143 82.5
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 5.4e-59 231.1 143 81.8
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 5.4e-59 231.1 130 87.7
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 7.0e-59 230.7 143 81.8
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 9.2e-59 230.3 143 81.8
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 9.2e-59 230.3 143 81.1
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 1.2e-58 229.9 143 81.8
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 2.0e-58 229.2 143 83.2
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 2.0e-58 229.2 143 80.4
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 2.7e-58 228.8 130 87.7
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 3.5e-58 228.4 143 81.8
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 3.5e-58 228.4 143 81.8
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 3.5e-58 228.4 143 81.8
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 3.5e-58 228.4 143 81.8
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 3.5e-58 228.4 143 81.8
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 3.5e-58 228.4 142 81.7
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 3.5e-58 228.4 146 84.9
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.9e-58 227.6 143 83.2
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 5.9e-58 227.6 144 81.2
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 7.8e-58 227.3 143 80.4
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 1.0e-57 226.9 143 83.2
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 1.0e-57 226.9 143 81.1
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 1.0e-57 226.9 144 84.7
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 1.0e-57 226.9 142 83.8
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.3e-57 226.5 143 80.4
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 1.7e-57 226.1 143 82.5
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 2.3e-57 225.7 144 84.0
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 2.3e-57 225.7 144 83.3
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.1e-56 223.4 144 81.9
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 1.1e-56 223.4 147 85.0
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 1.1e-56 223.4 147 85.0
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 1.5e-56 223.0 143 82.5
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.5e-56 223.0 143 79.0
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.5e-56 223.0 143 82.5
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 2.5e-56 222.2 144 82.6
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 2.5e-56 222.2 147 85.0
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 5.6e-56 221.1 144 84.0
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 7.3e-56 220.7 143 81.1
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 7.3e-56 220.7 144 81.9
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 7.3e-56 220.7 144 82.6
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.6e-55 219.5 143 80.4
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 1.6e-55 219.5 143 81.8
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 2.1e-55 219.2 142 80.3
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 3.6e-55 218.4 144 81.2
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 4.7e-55 218.0 144 79.9
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 6.1e-55 217.6 144 79.9
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 8.0e-55 217.2 144 81.2
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 1.4e-54 216.5 142 78.2
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 4.0e-54 214.9 144 79.2
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 5.2e-54 214.5 144 81.2
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 6.8e-54 214.2 135 81.5
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 1.2e-53 213.4 143 79.7
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 3.4e-53 211.8 145 78.6
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 5.8e-53 211.1 152 77.6
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.3e-52 209.9 129 86.0
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.2e-52 209.1 143 78.3
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 6.4e-52 207.6 144 81.2
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 8.3e-52 207.2 132 82.6
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 2.4e-51 205.7 144 77.1
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 5.4e-51 204.5 143 79.0
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 5.4e-51 204.5 143 79.0
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 5.4e-51 204.5 143 79.0
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 7.0e-51 204.1 134 82.8
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 1.2e-50 203.4 143 76.9
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.6e-50 203.0 143 76.9
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 2.7e-50 202.2 142 78.9
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 6.0e-50 201.1 149 74.5
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 1.0e-49 200.3 180 65.6
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 6.6e-49 197.6 141 75.9
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 8.6e-49 197.2 167 69.5
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 3.3e-48 195.3 120 84.2
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 5.6e-48 194.5 142 76.1
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 5.6e-48 194.5 146 72.6
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 1.2e-47 193.4 145 73.1
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 6.2e-47 191.0 146 75.3
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 8.9e-46 187.2 141 74.5
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 5.8e-45 184.5 142 73.2
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.2e-44 182.6 131 75.6
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 3.7e-44 181.8 91 96.7
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 6.4e-44 181.0 131 77.9
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.4e-43 179.9 116 85.3
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 2.4e-43 179.1 144 70.8
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 2.4e-43 179.1 122 81.1
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 9.2e-43 177.2 143 71.3
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 2.1e-42 176.0 136 77.2
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 3.5e-42 175.3 140 72.9
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 6.0e-42 174.5 122 82.0
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 1.0e-41 173.7 147 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.3e-41 173.3 145 66.9
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 3.9e-41 171.8 133 72.9
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 5.0e-41 171.4 95 87.4
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.9e-40 169.5 144 67.4
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 5.6e-40 167.9 125 77.6
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.2e-39 166.8 114 81.6
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 1.8e-38 162.9 130 66.9
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 4.0e-38 161.8 98 85.7
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 5.2e-38 161.4 89 88.8
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 6.8e-38 161.0 143 65.0
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 9.2e-35 150.6 122 73.0
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 1.3e-33 146.7 111 69.4
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 1.3e-33 146.7 103 77.7
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 1.1e-30 137.1 105 67.6
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 3.1e-30 135.6 136 56.6
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.2e-29 133.7 106 76.4
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 5.8e-29 131.3 123 60.2
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.8e-28 128.6 120 65.0
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.8e-28 128.6 120 65.0
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.9e-27 126.3 99 75.8
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 3.2e-27 125.6 146 56.8
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 6.0e-26 121.3 69 82.6
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.5e-24 116.7 62 88.7
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 5.6e-24 114.8 132 52.3
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 5.6e-24 114.8 132 54.5
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.6e-23 113.2 80 72.5
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 8.1e-23 110.9 77 72.7
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 1.1e-22 110.5 76 73.7
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 2.9e-20 102.4 81 70.4
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 1.4e-19 100.1 101 58.4
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.3e-17 92.8 45 91.1
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 1.6e-15 86.7 76 68.4
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 2.3e-09 66.2 35 94.3


User provided reference genes

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