Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 3.9e-144 515.0 302 100.0
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.1e-117 427.2 304 84.5
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 8.8e-112 407.5 306 77.8
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 5.7e-111 404.8 312 76.0
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 8.2e-110 401.0 309 81.6
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.2e-92 344.0 304 69.1
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 2.2e-91 339.7 301 61.8
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 2.9e-91 339.3 300 63.0
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 8.5e-91 337.8 300 63.0
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 2.3e-88 329.7 300 61.0
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 5.2e-88 328.6 302 62.6
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 6.8e-88 328.2 301 64.1
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 8.8e-88 327.8 290 65.2
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.2e-87 327.4 292 63.4
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 1.5e-87 327.0 301 63.8
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 3.7e-86 322.4 304 59.9
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.0e-85 318.2 313 68.1
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 9.1e-85 317.8 301 62.5
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.6e-84 317.0 300 68.0
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 2.0e-84 316.6 281 69.4
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 7.7e-84 314.7 292 68.2
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 1.3e-83 313.9 300 65.0
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 6.6e-83 311.6 304 67.1
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 8.6e-83 311.2 304 63.2
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 1.1e-82 310.8 303 61.4
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.1e-82 310.8 299 58.5
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.5e-82 310.5 306 66.0
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 3.3e-82 309.3 291 67.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 4.2e-82 308.9 302 57.9
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 5.6e-82 308.5 302 57.6
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.6e-81 307.0 300 61.7
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.6e-81 307.0 302 64.9
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.1e-81 306.6 308 65.3
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 4.7e-81 305.4 303 59.1
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 8.0e-81 304.7 303 63.7
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.8e-80 301.6 289 66.8
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.8e-80 301.6 289 66.8
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.8e-80 301.6 289 66.8
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.9e-80 301.2 297 65.3
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 8.9e-80 301.2 301 59.5
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.2e-79 300.8 297 60.3
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.5e-79 300.4 295 59.7
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.5e-79 300.4 290 64.5
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 2.0e-79 300.1 284 69.4
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 2.6e-79 299.7 302 62.3
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.7e-79 298.5 289 66.1
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 1.3e-78 297.4 301 61.5
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.2e-78 296.6 292 67.8
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 2.9e-78 296.2 286 67.1
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.9e-78 295.4 297 59.3
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 6.4e-78 295.0 292 63.4
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 8.3e-78 294.7 292 67.5
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 1.1e-77 294.3 310 61.9
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 4.1e-77 292.4 299 62.5
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 4.1e-77 292.4 293 62.5
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 5.4e-77 292.0 296 61.1
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 9.2e-77 291.2 281 61.6
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-76 290.0 301 61.1
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.0e-76 290.0 291 62.5
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.0e-76 290.0 282 59.6
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 5.9e-76 288.5 262 63.4
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 7.8e-76 288.1 298 61.4
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 7.8e-76 288.1 298 61.4
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 7.8e-76 288.1 298 61.4
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.0e-75 287.7 297 60.9
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 1.7e-75 287.0 293 62.1
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.7e-75 287.0 262 69.1
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 2.3e-75 286.6 262 65.6
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.9e-75 286.2 295 59.3
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 2.9e-75 286.2 292 63.4
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 3.9e-75 285.8 301 57.5
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 5.0e-75 285.4 311 57.9
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.1e-74 284.3 265 61.1
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.5e-74 283.9 299 60.9
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.5e-74 283.9 302 56.0
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 2.5e-74 283.1 262 60.3
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 4.3e-74 282.3 307 62.2
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 9.5e-74 281.2 295 62.7
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.2e-73 280.8 291 59.5
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.6e-73 280.4 278 59.0
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 1.6e-73 280.4 299 60.9
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.6e-73 280.4 286 58.7
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.1e-73 280.0 294 65.3
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.1e-73 280.0 297 59.6
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.1e-73 280.0 291 57.0
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.1e-73 280.0 297 58.2
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 2.1e-73 280.0 286 58.7
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 6.2e-73 278.5 291 59.1
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 3.1e-72 276.2 302 55.6
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.0e-72 275.8 295 65.8
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 8.9e-72 274.6 303 56.8
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 8.9e-72 274.6 283 56.5
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 8.9e-72 274.6 297 58.6
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.6e-71 273.1 290 54.5
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 3.4e-71 272.7 300 55.0
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 3.4e-71 272.7 296 62.8
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 4.4e-71 272.3 298 54.7
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 1.3e-70 270.8 303 58.7
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 3.7e-70 269.2 295 56.3
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 8.3e-70 268.1 305 59.3
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.1e-69 267.7 269 59.9
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 1.4e-69 267.3 305 58.0
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.4e-69 267.3 284 60.6
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.4e-69 266.5 307 61.2
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.4e-69 266.5 311 61.4
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 3.2e-69 266.2 297 58.9
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 2.0e-68 263.5 301 59.8
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 2.0e-68 263.5 259 60.2
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 7.8e-68 261.5 301 59.5
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 7.8e-68 261.5 303 56.1
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 5.0e-67 258.8 280 58.2
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.5e-66 257.3 299 54.5
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 4.3e-66 255.8 311 54.0
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 3.6e-65 252.7 301 58.5
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.6e-65 252.7 293 61.1
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 6.2e-65 251.9 242 61.6
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 2.3e-64 250.0 301 53.8
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 5.2e-64 248.8 271 54.2
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 6.8e-64 248.4 235 67.7
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.2e-63 247.7 300 56.7
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.6e-63 246.5 302 57.9
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 3.4e-63 246.1 265 54.7
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 7.5e-63 245.0 294 59.2
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 1.3e-62 244.2 295 61.0
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.7e-62 242.7 293 60.4
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.6e-60 235.7 290 57.9
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.9e-58 230.3 307 55.0
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 4.7e-57 225.7 306 48.7
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.6e-55 219.9 289 56.7
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 7.1e-53 211.8 294 51.0
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.1e-53 211.8 274 51.1
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 9.2e-53 211.5 247 55.1
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.6e-52 210.7 201 65.2
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.6e-49 199.5 274 48.5
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 8.9e-48 194.9 214 57.5
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.7e-46 190.7 273 42.9
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 4.9e-46 189.1 139 68.3
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.2e-45 186.4 197 64.5
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 4.2e-45 186.0 239 47.3
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 7.1e-45 185.3 291 43.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 2.3e-43 180.3 284 50.4
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.4e-40 171.0 291 44.0
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 9.0e-40 168.3 165 61.8
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 1.5e-39 167.5 312 43.9
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 7.6e-39 165.2 159 59.7
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 2.2e-38 163.7 189 58.2
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 1.1e-37 161.4 285 41.8
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 4.2e-37 159.5 138 56.5
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 7.1e-37 158.7 135 59.3
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.7e-35 154.1 186 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 2.5e-34 150.2 293 35.2
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 9.6e-34 148.3 188 59.6
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 2.8e-33 146.7 293 38.6
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 8.1e-33 145.2 137 55.5
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 2.4e-32 143.7 258 41.1
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 4.0e-32 142.9 238 37.8
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.5e-31 139.4 170 52.9
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 4.5e-31 139.4 170 52.9
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 5.8e-31 139.0 169 50.9
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 2.2e-30 137.1 247 40.9
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 9.3e-29 131.7 288 37.2
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.1e-25 120.6 101 62.4
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-24 118.2 145 49.0
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 2.9e-22 110.2 220 39.1
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 3.8e-22 109.8 210 35.7
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 6.5e-22 109.0 123 56.9
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.1e-20 104.0 72 69.4
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.3e-17 92.4 75 62.7
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 8.2e-17 92.0 248 31.5
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 2.4e-16 90.5 199 37.7
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 2.6e-15 87.0 274 31.0
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.9e-14 83.6 158 44.9
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 3.2e-13 80.1 74 63.5
Oeu039213.1 Olea europaea HOM05D003921 ORTHO05D004394 7.2e-13 79.0 58 74.1
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 9.3e-13 78.6 98 56.1
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 3.5e-12 76.6 48 75.0
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.3e-11 73.9 111 46.8
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 5.1e-11 72.8 86 58.1
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 1.1e-08 65.1 54 70.4
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.4e-08 64.7 60 53.3


User provided reference genes

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