Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 9.4e-95 350.5 223 100.0
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.3e-80 303.5 223 81.6
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.1e-78 296.2 223 85.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 2.1e-78 296.2 223 85.2
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 3.6e-62 242.3 222 72.5
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 4.7e-62 241.9 224 65.6
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 4.7e-62 241.9 223 69.5
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 6.2e-62 241.5 224 72.3
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 4.0e-61 238.8 224 66.1
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 6.8e-61 238.0 224 66.1
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.4e-60 235.7 224 64.7
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.8e-60 235.0 229 59.8
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 5.8e-60 235.0 224 66.1
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 7.5e-60 234.6 222 65.8
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.2e-59 233.0 229 63.3
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.2e-59 233.0 229 63.3
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.9e-59 232.6 237 69.2
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 3.7e-59 232.3 223 63.7
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 6.4e-59 231.5 231 67.5
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.4e-59 231.5 229 62.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.1e-58 230.7 229 62.4
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.4e-58 230.3 223 64.6
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 2.4e-58 229.6 226 61.5
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.2e-58 229.2 229 67.2
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 4.1e-58 228.8 224 64.7
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 4.1e-58 228.8 222 64.0
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 9.2e-58 227.6 223 70.9
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 9.2e-58 227.6 229 61.6
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-57 227.3 240 66.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.2e-57 227.3 240 66.2
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.2e-57 227.3 223 63.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.0e-57 226.5 224 60.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.7e-57 226.1 223 63.7
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 3.5e-57 225.7 228 66.7
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 4.6e-57 225.3 229 63.3
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 7.8e-57 224.6 223 64.6
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.0e-56 224.2 229 62.9
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.3e-56 223.8 224 67.9
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.3e-56 223.0 223 61.4
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.0e-56 222.6 223 66.4
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.9e-56 222.2 224 70.1
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 3.9e-56 222.2 224 70.1
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 6.6e-56 221.5 228 61.8
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.5e-55 220.3 223 59.2
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 3.3e-55 219.2 223 61.4
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 4.3e-55 218.8 126 87.3
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.3e-55 218.8 243 56.0
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 5.6e-55 218.4 223 58.7
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 5.6e-55 218.4 223 70.9
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 9.5e-55 217.6 223 70.9
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 9.5e-55 217.6 223 63.7
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.2e-54 217.2 223 65.9
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.8e-54 216.1 223 60.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 3.6e-54 215.7 228 67.1
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 3.6e-54 215.7 223 60.5
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 6.2e-54 214.9 223 68.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.8e-53 213.4 234 66.2
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.3e-53 213.0 237 67.1
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.3e-53 213.0 222 67.1
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 4.0e-53 212.2 223 58.7
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 5.2e-53 211.8 227 66.5
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.8e-53 211.5 229 66.8
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 6.8e-53 211.5 220 67.7
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.2e-52 210.7 126 84.1
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.2e-52 210.7 127 83.5
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 1.2e-52 210.7 225 60.4
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.5e-52 210.3 226 66.8
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 2.0e-52 209.9 223 59.6
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.0e-52 209.9 232 66.4
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 2.6e-52 209.5 243 65.0
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.4e-52 209.1 224 66.5
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 4.4e-52 208.8 225 65.8
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 4.4e-52 208.8 221 66.1
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.8e-52 208.4 223 66.8
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 7.5e-52 208.0 223 71.3
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 9.8e-52 207.6 227 64.3
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.3e-51 207.2 221 61.1
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.7e-51 206.8 127 81.1
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.7e-51 206.8 222 70.7
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.2e-51 206.5 226 55.8
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 2.9e-51 206.1 205 61.0
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 4.9e-51 205.3 230 57.8
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 8.3e-51 204.5 122 82.8
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.1e-50 204.1 223 70.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.9e-50 203.4 255 62.4
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.4e-50 203.0 126 79.4
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 4.1e-50 202.2 223 58.7
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.6e-49 200.3 220 63.6
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.7e-49 199.5 223 58.7
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 6.0e-49 198.4 127 78.7
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 6.0e-49 198.4 252 61.9
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 7.8e-49 198.0 211 60.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 5.1e-48 195.3 263 57.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.5e-47 193.7 126 76.2
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-47 193.4 127 74.0
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 3.3e-47 192.6 124 78.2
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 4.3e-47 192.2 223 57.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 7.3e-47 191.4 127 74.0
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.1e-46 189.9 125 73.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.8e-46 189.5 125 72.8
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.8e-46 189.5 125 72.8
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.6e-46 189.1 126 73.8
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 3.6e-46 189.1 127 72.4
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 4.7e-46 188.7 127 72.4
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 6.2e-46 188.3 127 71.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 8.1e-46 188.0 125 72.8
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.1e-45 187.6 127 70.9
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.8e-45 186.8 211 55.0
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.8e-45 184.9 204 66.2
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.5e-44 183.7 230 60.4
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.8e-43 179.1 106 85.8
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 6.4e-43 178.3 129 74.4
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.4e-42 176.4 105 83.8
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.6e-41 173.7 233 50.2
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.0e-40 171.0 148 73.6
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.5e-39 166.4 220 48.6
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.6e-38 162.5 194 66.5
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.1e-37 159.5 123 69.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 8.9e-37 157.9 125 66.4
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 8.9e-37 157.9 223 49.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.2e-36 157.5 226 45.6
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.0e-36 156.8 181 59.7
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.6e-36 156.4 202 55.0
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.8e-36 155.2 212 62.7
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 3.8e-35 152.5 95 74.7
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.4e-34 150.6 101 77.2
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.4e-34 149.8 216 45.4
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 9.3e-34 147.9 127 60.6
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.2e-33 147.5 109 72.5
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.1e-33 146.7 108 67.6
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 4.6e-33 145.6 126 57.9
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 6.0e-33 145.2 221 47.1
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 6.0e-33 145.2 221 47.1
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.0e-32 144.4 131 58.8
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.0e-32 144.4 183 55.2
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-32 144.1 129 59.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 5.6e-31 138.7 133 56.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 4.8e-30 135.6 180 56.1
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 4.8e-30 135.6 127 57.5
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 8.1e-30 134.8 124 56.5
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-29 133.7 127 57.5
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-29 133.7 128 57.0
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 3.8e-27 125.9 87 73.6
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.9e-26 123.6 103 57.3
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.9e-24 115.9 82 76.8
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 2.5e-23 113.2 235 43.0
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.3e-22 110.9 149 55.7
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.1e-21 107.8 148 54.1
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-19 100.9 79 63.3
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 8.7e-16 88.2 74 59.5
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 6.9e-13 78.6 63 60.3
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.2e-12 77.8 48 72.9
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.6e-12 76.6 113 40.7
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.0e-11 74.7 119 63.0
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 4.2e-10 69.3 120 36.7
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 2.1e-09 67.0 118 59.3
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 3.5e-09 66.2 154 45.5
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.8e-08 63.9 90 43.3
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.8e-08 63.9 118 44.9
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 1.1e-07 61.2 41 65.9
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 9.6e-07 58.2 37 70.3
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 4.8e-06 55.8 43 65.1


User provided reference genes

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