Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.5e-283 977.6 492 100.0
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.7e-261 904.4 485 93.6
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.0e-258 896.3 486 91.8
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.3e-249 864.8 504 86.7
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.5e-233 812.8 471 84.3
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 8.1e-232 807.0 484 80.4
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 1.4e-231 806.2 475 82.3
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.1e-231 805.1 478 82.2
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 5.2e-231 804.3 459 84.3
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 1.2e-230 803.1 478 81.2
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 2.0e-230 802.4 468 82.7
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 5.8e-230 800.8 478 81.6
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.9e-229 798.5 469 82.1
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 3.8e-229 798.1 496 79.2
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 6.4e-229 797.3 473 81.6
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 8.4e-229 797.0 475 82.1
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 8.4e-229 797.0 506 77.9
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.1e-228 796.6 496 79.0
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.1e-228 796.6 459 83.2
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 2.4e-228 795.4 492 78.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 3.2e-228 795.0 480 80.6
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.2e-228 795.0 459 83.7
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.2e-228 794.7 483 80.1
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 5.4e-228 794.3 469 81.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.1e-227 792.3 475 80.6
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.1e-227 792.3 459 82.8
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 2.7e-227 792.0 469 80.8
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.7e-227 792.0 470 81.7
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 6.0e-227 790.8 497 78.1
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 7.8e-227 790.4 457 82.7
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 7.8e-227 790.4 464 81.5
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 7.8e-227 790.4 477 80.9
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 7.8e-227 790.4 457 82.7
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.7e-226 789.3 470 81.5
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 1.7e-226 789.3 493 78.5
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 2.3e-226 788.9 476 79.6
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 3.0e-226 788.5 461 81.8
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.0e-226 788.5 478 79.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 3.9e-226 788.1 469 80.8
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 5.1e-226 787.7 459 82.1
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 8.7e-226 786.9 474 80.6
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 8.7e-226 786.9 486 79.2
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.1e-225 786.6 486 79.0
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.9e-225 785.8 493 79.5
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.5e-225 785.4 459 81.9
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.5e-225 785.4 478 80.3
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 3.3e-225 785.0 459 82.4
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.3e-225 785.0 473 80.5
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 7.3e-225 783.9 471 79.8
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 9.6e-225 783.5 459 80.8
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.3e-224 783.1 471 79.2
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.1e-224 782.3 471 81.5
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.6e-224 781.6 486 78.4
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.8e-224 781.2 471 78.8
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 4.8e-224 781.2 476 79.4
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.4e-223 779.6 478 78.9
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.8e-223 779.2 487 77.8
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 2.4e-223 778.9 459 82.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.4e-223 778.9 491 78.2
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 4.0e-223 778.1 469 80.0
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 5.3e-223 777.7 472 79.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 9.0e-223 776.9 486 79.4
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.2e-222 776.5 473 77.8
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.4e-222 775.0 459 80.4
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.5e-222 774.6 460 80.4
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 5.8e-222 774.2 459 80.8
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.8e-222 774.2 517 74.5
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.8e-221 771.5 505 75.4
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 3.8e-221 771.5 488 77.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 6.4e-221 770.8 473 79.1
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 8.4e-221 770.4 459 81.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 8.4e-221 770.4 459 79.7
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 1.2e-219 766.5 483 77.0
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 6.0e-219 764.2 497 76.9
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 6.0e-219 764.2 478 78.5
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.3e-218 763.1 459 78.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.8e-218 762.7 471 77.7
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 6.7e-218 760.8 466 78.3
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 8.7e-218 760.4 469 76.8
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 8.7e-218 760.4 485 75.7
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 8.7e-218 760.4 459 78.0
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.5e-217 759.6 485 75.7
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.9e-217 759.2 469 76.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.5e-217 758.8 469 76.3
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 2.5e-217 758.8 459 77.8
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.3e-217 758.4 459 78.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 4.3e-217 758.1 467 76.9
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 7.4e-217 757.3 492 75.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 2.8e-216 755.4 459 77.6
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 8.1e-216 753.8 482 74.7
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 2.4e-215 752.3 459 78.6
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.1e-215 751.9 460 77.4
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 6.9e-215 750.7 459 76.9
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 9.0e-215 750.4 459 77.1
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 9.0e-215 750.4 484 77.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 6.4e-213 744.2 480 74.6
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 3.2e-212 741.9 509 71.7
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.7e-211 738.8 516 71.7
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.5e-211 738.4 459 76.7
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 2.3e-210 735.7 484 75.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.5e-206 723.0 484 71.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 4.9e-205 718.0 474 71.9
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.5e-204 715.7 473 72.5
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 6.0e-203 711.1 476 72.3
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.3e-202 709.1 489 73.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 1.5e-201 706.4 481 71.1
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.1e-199 698.4 412 79.9
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.3e-197 693.3 457 70.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 4.2e-196 688.3 402 81.6
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.7e-195 685.6 464 71.3
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.1e-193 680.2 459 73.2
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.2e-192 674.1 464 70.9
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.5e-190 669.8 386 84.2
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.5e-190 669.8 382 84.8
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.2e-189 666.0 472 71.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 5.0e-189 664.8 445 72.6
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.3e-186 656.0 378 84.9
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.7e-184 649.8 371 82.7
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 1.2e-182 643.7 453 69.5
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 4.5e-182 641.7 373 81.0
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 8.5e-181 637.5 488 67.0
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.2e-180 635.2 729 49.0
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 5.2e-178 628.2 453 65.8
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 3.1e-175 619.0 389 78.4
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.6e-171 605.5 453 67.5
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 6.1e-171 604.7 435 68.3
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 9.7e-169 597.4 453 65.3
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 9.8e-161 570.9 344 81.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.6e-153 546.2 428 67.8
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 6.2e-115 418.7 340 64.4
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 4.4e-113 412.5 293 72.0
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 7.6e-113 411.8 276 74.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 7.6e-113 411.8 237 81.9
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 5.1e-93 345.9 460 40.2
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-92 344.4 247 71.3
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.6e-91 340.9 467 39.6
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.6e-86 322.8 201 76.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 2.5e-84 317.0 463 38.4
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 6.7e-77 292.4 240 64.6
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.3e-64 251.5 384 41.4
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.1e-62 244.2 131 89.3
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 4.1e-58 229.9 153 77.1
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 5.0e-56 223.0 167 67.1
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 9.4e-55 218.8 165 68.5
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 5.7e-52 209.5 196 57.7
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 2.8e-43 180.6 131 62.6
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.8e-43 180.6 121 66.1
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.1e-42 178.7 98 86.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-42 177.6 249 41.4
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 3.8e-40 170.2 389 30.6
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 8.0e-38 162.5 134 61.2
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.8e-37 161.4 91 82.4
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.9e-32 144.1 124 55.6
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 8.6e-32 142.5 93 76.3
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 7.3e-31 139.4 80 78.8
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 3.1e-29 134.0 100 65.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 9.8e-28 129.0 74 81.1
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 1.3e-27 128.6 290 30.3
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 4.9e-27 126.7 100 64.0
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 7.3e-15 86.3 56 67.9
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 2.3e-13 81.3 41 90.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.7e-11 75.1 43 79.1
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 2.2e-11 74.7 47 72.3
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 2.1e-09 68.2 89 50.6
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.9e-07 61.6 35 80.0
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 4.7e-06 57.0 34 76.5


User provided reference genes

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