Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 1.7e-211 739.2 404 100.0
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 6.1e-185 651.0 408 87.7
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 1.1e-173 613.6 408 84.6
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.5e-172 608.2 402 84.3
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 1.5e-170 603.2 408 84.1
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.2e-145 520.4 421 71.3
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 6.4e-142 508.1 422 69.7
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 5.4e-141 505.0 414 72.7
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 5.1e-139 498.4 409 72.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.5e-138 496.1 424 71.7
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 3.3e-138 495.7 408 72.8
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 9.5e-138 494.2 408 72.8
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 9.5e-138 494.2 413 68.8
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 1.1e-136 490.7 411 70.8
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.4e-136 489.6 417 70.3
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 3.4e-135 485.7 410 70.0
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.7e-134 483.4 412 68.9
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 3.8e-134 482.3 410 68.8
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 1.1e-133 480.7 410 69.3
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.9e-133 479.9 409 69.4
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.4e-133 479.6 423 67.6
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 9.2e-133 477.6 408 69.9
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 2.1e-132 476.5 410 69.3
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 2.3e-131 473.0 410 67.6
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 6.6e-131 471.5 408 67.9
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.9e-130 469.9 409 67.5
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 4.3e-130 468.8 409 68.7
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.6e-130 468.4 410 69.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 5.6e-130 468.4 409 67.2
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 9.6e-130 467.6 407 65.1
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 2.1e-129 466.5 409 68.5
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 2.8e-129 466.1 409 68.5
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 4.7e-129 465.3 411 67.9
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 8.1e-129 464.5 409 67.2
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 1.1e-128 464.2 409 68.0
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 4.0e-128 462.2 409 67.7
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 6.9e-128 461.5 408 68.9
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.9e-128 461.5 408 68.6
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 4.4e-127 458.8 405 67.9
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.4e-127 458.8 433 65.1
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 5.8e-127 458.4 404 67.1
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 7.6e-127 458.0 353 72.0
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 1.3e-126 457.2 408 68.1
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.7e-126 456.8 406 66.0
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 1.7e-126 456.8 408 67.2
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 1.7e-126 456.8 430 65.3
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.4e-125 453.0 406 67.5
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.2e-125 452.6 409 66.7
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 4.2e-125 452.2 414 66.7
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 5.4e-125 451.8 403 66.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 7.1e-125 451.4 408 68.6
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 7.1e-125 451.4 406 67.2
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.6e-124 450.3 409 65.5
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.0e-124 448.4 406 67.5
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 7.8e-124 448.0 353 70.8
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 1.7e-123 446.8 340 73.2
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.7e-123 446.8 405 66.7
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 3.0e-123 446.0 406 66.0
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 3.0e-123 446.0 405 68.1
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.9e-123 445.7 353 70.5
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 3.9e-123 445.7 409 68.0
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 1.1e-122 444.1 407 66.6
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.5e-122 443.7 415 66.0
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 2.5e-122 443.0 424 64.9
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 2.8e-121 439.5 405 66.7
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 3.6e-121 439.1 409 64.5
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 6.2e-121 438.3 405 65.9
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 1.8e-120 436.8 412 63.8
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.8e-120 436.8 413 64.9
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.4e-120 436.4 408 64.5
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 2.4e-120 436.4 412 65.5
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.3e-120 435.3 408 64.5
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 6.9e-120 434.9 423 64.5
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.0e-119 433.3 409 64.1
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.8e-119 431.8 408 64.2
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 9.9e-119 431.0 425 64.0
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.9e-118 428.7 407 64.9
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 8.4e-118 427.9 408 65.2
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.4e-117 427.2 410 64.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.6e-116 423.7 408 64.0
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 2.7e-116 422.9 409 62.6
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 4.6e-116 422.2 408 62.7
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.8e-115 420.2 412 62.1
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 2.3e-115 419.9 441 59.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.3e-115 419.9 405 63.5
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 3.9e-115 419.1 409 63.6
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 5.1e-115 418.7 331 69.8
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 2.5e-114 416.4 437 61.1
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 3.3e-114 416.0 394 63.5
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.3e-113 414.1 404 63.1
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.3e-113 414.1 417 62.6
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.1e-113 413.3 413 63.9
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.8e-113 412.9 412 62.9
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 4.8e-113 412.1 435 60.5
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-112 411.0 410 63.7
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 5.3e-112 408.7 436 59.6
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 9.0e-112 407.9 409 61.1
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 3.4e-111 406.0 413 63.2
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 7.6e-111 404.8 439 61.0
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.7e-110 403.7 338 66.0
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 5.5e-109 398.7 438 58.4
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 5.5e-109 398.7 363 64.7
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 1.6e-108 397.1 336 70.2
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 7.9e-108 394.8 409 61.4
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 3.0e-107 392.9 437 58.4
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 3.0e-107 392.9 435 59.1
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 3.0e-107 392.9 435 59.1
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 6.7e-107 391.7 407 59.7
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.5e-106 389.8 440 58.2
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 1.2e-103 380.9 434 58.5
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 4.5e-103 379.0 317 69.7
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 5.8e-103 378.6 434 57.8
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.0e-102 377.9 405 60.2
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 6.0e-100 368.6 409 57.7
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 5.1e-99 365.5 338 65.7
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.5e-98 364.0 407 56.5
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 4.3e-98 362.5 444 55.2
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 6.3e-97 358.6 350 62.3
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 1.4e-93 347.4 327 63.3
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 7.2e-93 345.1 415 57.3
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 3.9e-91 339.3 348 62.1
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 1.8e-88 330.5 413 53.5
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 9.7e-82 308.1 403 53.6
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 2.2e-78 297.0 346 58.1
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 6.5e-78 295.4 421 48.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 3.0e-75 286.6 385 53.8
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 6.3e-73 278.9 392 50.5
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 7.0e-72 275.4 390 50.8
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 3.2e-69 266.5 417 45.8
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.2e-65 253.8 243 65.0
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.9e-61 240.7 293 55.6
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.7e-60 236.9 406 43.1
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 5.0e-54 216.1 224 58.0
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 8.0e-52 208.8 206 59.7
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 2.6e-50 203.8 248 51.6
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 1.8e-48 197.6 266 53.8
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 1.8e-48 197.6 266 53.8
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 7.8e-47 192.2 286 47.2
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 7.8e-47 192.2 217 55.8
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 7.3e-45 185.7 388 40.7
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.8e-44 183.7 317 42.0
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.4e-42 176.4 345 43.5
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.6e-39 167.9 316 42.1
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 3.0e-38 163.7 382 36.9
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.9e-37 161.0 387 37.2
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.1e-35 153.7 210 47.6
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.3e-30 138.3 112 67.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 1.6e-28 131.3 102 67.6
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 8.1e-28 129.0 198 47.0
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 4.9e-25 119.8 155 57.4
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 2.7e-23 114.0 248 32.3
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 4.0e-19 100.1 125 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.1e-13 82.0 218 26.6
Lsat_1_v5_gn_8_95180 Lactuca sativa HOM05D004552 ORTHO05D005501 2.4e-08 64.3 63 61.9
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 4.6e-07 60.1 122 37.7


User provided reference genes

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