Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.5e-239 833.2 713 100.0
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 3.0e-171 606.3 719 84.0
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 6.0e-151 538.9 716 79.5
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 2.1e-148 530.4 711 76.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 9.3e-128 461.8 626 82.1
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.2e-124 449.1 676 78.7
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 3.1e-123 446.8 708 75.8
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 2.6e-122 443.7 687 77.1
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 2.9e-121 440.3 722 73.7
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.9e-121 440.3 668 72.2
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 9.3e-120 435.3 697 73.7
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 1.2e-119 434.9 698 74.4
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.6e-119 433.0 707 76.0
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 8.7e-118 428.7 687 73.2
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.9e-117 427.6 620 81.3
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 2.1e-116 424.1 688 74.1
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 6.2e-116 422.5 624 79.6
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 6.2e-116 422.5 673 75.6
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.8e-115 421.0 630 79.4
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 3.1e-115 420.2 715 71.5
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 9.0e-115 418.7 714 71.4
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.5e-114 417.9 708 72.5
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.6e-114 417.2 712 71.5
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.8e-114 416.0 623 69.7
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 5.8e-114 416.0 674 76.1
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 3.2e-112 410.2 674 74.8
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.1e-111 407.5 671 75.3
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.8e-110 404.4 686 73.0
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 3.0e-110 403.7 562 84.7
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 3.3e-109 400.2 676 70.6
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 3.7e-108 396.7 700 72.6
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.8e-107 394.4 721 71.0
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 3.1e-107 393.7 676 72.0
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.5e-106 391.3 678 72.6
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 7.6e-106 389.0 682 72.1
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 7.6e-106 389.0 728 69.4
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 3.8e-105 386.7 710 71.5
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 9.3e-104 382.1 654 72.5
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.6e-103 381.3 658 72.3
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 4.6e-103 379.8 728 68.0
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 1.9e-101 374.4 660 72.6
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 9.7e-101 372.1 687 71.6
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 4.8e-100 369.8 706 70.7
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.1e-99 368.6 671 71.5
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.1e-99 368.6 722 67.0
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 3.1e-99 367.1 626 76.4
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 3.1e-99 367.1 681 67.0
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.5e-98 364.8 709 69.0
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.5e-98 364.8 662 72.8
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 2.0e-98 364.4 626 75.1
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 4.5e-98 363.2 697 70.2
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.5e-98 363.2 679 72.0
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.0e-97 362.1 680 69.0
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 2.2e-97 360.9 655 73.1
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 6.5e-97 359.4 620 75.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 6.5e-97 359.4 697 70.7
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 8.5e-97 359.0 620 74.7
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 7.2e-96 355.9 626 74.6
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 9.3e-96 355.5 619 74.6
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 9.3e-96 355.5 615 74.3
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.6e-95 354.8 697 69.0
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 3.6e-95 353.6 678 65.5
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 7.9e-95 352.4 715 61.8
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.0e-94 352.1 707 68.5
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 3.0e-94 350.5 613 69.3
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 3.9e-94 350.1 663 67.1
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 8.7e-94 349.0 665 66.8
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-93 348.6 613 69.2
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 1.5e-93 348.2 576 77.8
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 3.3e-93 347.1 613 69.5
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 3.3e-93 347.1 602 73.9
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 9.7e-93 345.5 653 70.6
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.1e-91 342.0 667 72.0
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.4e-91 341.7 589 76.1
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.8e-91 341.3 455 68.1
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.4e-91 340.9 417 72.2
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 4.5e-90 336.7 711 65.3
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 5.9e-90 336.3 719 64.3
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.9e-88 331.3 630 72.7
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 2.5e-88 330.9 649 65.0
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 5.1e-86 323.2 660 70.0
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.7e-86 322.8 709 67.3
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.7e-86 322.8 692 67.9
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 3.3e-85 320.5 327 53.2
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 4.1e-83 313.5 672 68.5
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 7.7e-82 309.3 565 71.5
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 2.2e-81 307.8 316 53.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 7.2e-80 302.8 673 66.9
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 9.4e-80 302.4 498 85.3
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 8.0e-79 299.3 351 47.3
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.4e-78 298.5 670 68.2
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.3e-76 292.0 303 51.8
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 7.0e-75 286.2 694 64.7
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 4.5e-74 283.5 271 55.4
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 8.0e-71 272.7 225 60.4
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.0e-69 268.1 402 67.4
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 7.5e-53 213.0 502 75.5
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.3e-52 212.2 489 78.7
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.8e-52 211.1 512 77.1
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 7.0e-51 206.5 334 63.2
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 1.0e-41 176.0 518 67.2
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.7e-36 157.5 131 55.7
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 5.0e-33 147.1 408 86.8
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.4e-27 128.3 82 80.5
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 1.2e-26 125.9 82 76.8
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 3.0e-25 121.3 201 32.8
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 3.9e-25 120.9 73 83.6
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 6.6e-25 120.2 215 32.6
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 9.5e-24 116.3 180 38.9
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.2e-20 105.1 68 79.4
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 6.4e-20 103.6 82 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.4e-19 102.4 194 31.4
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 4.3e-16 90.9 76 63.2
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 9.9e-13 79.7 218 34.9
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.9e-12 78.2 62 69.4
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 1.0e-09 69.7 67 56.7
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 4.0e-06 57.8 139 25.2


User provided reference genes

Program Settings