Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 0.0e+00 1142.9 567 100.0
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 2.6e-274 948.3 534 87.8
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 7.8e-271 936.8 530 87.2
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.9e-269 932.2 530 87.7
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.5e-242 842.8 534 75.8
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.7e-241 839.3 527 76.9
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 2.2e-241 839.0 525 76.4
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.3e-238 829.7 524 76.7
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 7.4e-237 823.9 531 75.9
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 7.4e-237 823.9 533 74.7
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 6.2e-236 820.8 523 76.7
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 8.2e-236 820.5 523 75.7
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 1.8e-235 819.3 567 72.1
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.4e-235 818.9 523 76.3
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.5e-234 816.2 533 75.4
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 2.9e-233 812.0 527 74.8
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 3.8e-233 811.6 523 74.8
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 4.9e-233 811.2 518 75.7
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 4.2e-232 808.1 531 76.5
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 4.2e-232 808.1 524 74.0
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 1.2e-231 806.6 527 74.2
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 2.7e-231 805.4 528 74.1
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.3e-230 803.1 552 71.7
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.3e-230 802.4 528 75.2
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 3.9e-230 801.6 531 73.1
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 3.9e-230 801.6 526 73.4
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 5.1e-230 801.2 525 74.5
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 1.5e-229 799.7 540 75.2
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 2.8e-228 795.4 526 72.8
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.8e-227 792.7 536 71.6
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 1.0e-225 786.9 530 72.1
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.9e-225 785.4 526 72.4
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 1.4e-222 776.5 527 72.3
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 1.1e-221 773.5 565 67.1
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 4.8e-220 768.1 527 72.5
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 4.8e-220 768.1 538 71.0
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 1.8e-219 766.1 543 72.0
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 1.0e-217 760.4 527 69.4
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 3.8e-217 758.4 523 69.2
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 4.7e-215 751.5 526 70.9
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 6.1e-215 751.1 539 68.1
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 1.4e-214 750.0 530 70.0
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 2.3e-214 749.2 524 70.4
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 3.9e-214 748.4 531 70.2
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 8.8e-214 747.3 527 70.0
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.1e-213 746.9 526 68.6
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 2.0e-213 746.1 524 70.4
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 2.0e-213 746.1 490 74.5
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 2.0e-213 746.1 496 73.0
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 3.3e-213 745.3 531 69.1
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.7e-212 743.0 525 69.1
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 2.2e-212 742.7 523 68.8
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 2.8e-212 742.3 525 68.6
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 4.8e-212 741.5 523 68.6
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.4e-211 740.0 534 67.4
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 2.4e-211 739.2 526 68.3
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 7.0e-211 737.6 562 66.2
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 4.5e-210 734.9 524 68.1
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.2e-209 732.6 502 69.7
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.1e-208 730.3 555 65.9
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 3.6e-207 725.3 518 69.3
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.8e-206 723.0 529 66.4
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 3.9e-206 721.8 525 67.6
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 9.7e-205 717.2 525 64.4
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.8e-203 713.0 526 66.3
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 4.1e-203 711.8 526 66.2
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 4.1e-203 711.8 526 66.2
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 7.0e-203 711.1 526 66.2
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 1.2e-202 710.3 525 66.1
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 6.5e-201 704.5 542 65.9
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 7.2e-200 701.0 524 64.5
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 9.4e-200 700.7 527 65.7
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 2.7e-199 699.1 528 67.4
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 2.2e-196 689.5 546 64.7
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 7.2e-192 674.5 482 69.5
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 4.1e-187 658.7 509 65.6
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 7.0e-187 657.9 612 57.4
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 1.2e-186 657.1 527 63.9
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 4.1e-179 632.1 524 59.9
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 5.0e-177 625.2 531 57.4
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 6.8e-174 614.8 527 60.0
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.2e-170 604.0 535 59.6
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 4.3e-168 595.5 587 54.2
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 8.9e-166 587.8 534 57.9
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 3.4e-165 585.9 533 54.0
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 1.3e-164 583.9 522 54.0
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.6e-159 565.8 525 54.7
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 6.4e-156 555.1 627 50.1
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 8.3e-156 554.7 551 55.4
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 3.3e-152 542.7 523 53.3
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 4.4e-149 532.3 539 50.5
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 8.7e-145 518.1 301 78.7
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 2.8e-143 513.1 316 75.6
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 5.3e-134 482.3 521 46.8
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 5.8e-133 478.8 301 74.8
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 3.9e-129 466.1 300 70.7
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 5.8e-125 452.2 464 53.7
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 3.5e-122 443.0 557 47.9
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 4.2e-115 419.5 558 44.3
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.4e-107 394.4 244 77.0
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 1.4e-102 377.9 303 62.7
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 8.8e-97 358.6 645 33.3
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 6.3e-87 325.9 371 49.6
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 6.1e-74 282.7 483 36.4
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 2.4e-70 270.8 207 65.2
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 1.2e-66 258.5 574 33.1
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 1.8e-62 244.6 231 53.7
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 1.1e-59 235.3 205 58.0
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 2.8e-58 230.7 205 57.6
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.7e-58 229.9 209 60.8
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.0e-57 226.9 209 59.8
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.0e-57 226.9 211 59.7
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 5.2e-57 226.5 170 63.5
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.2e-47 194.5 104 82.7
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 3.9e-36 157.1 184 50.0
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 3.6e-34 150.6 85 80.0
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 1.1e-27 129.0 130 53.8
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 7.3e-27 126.3 324 29.3
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.0e-12 79.3 47 76.6
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.3e-12 78.2 87 48.3
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 2.5e-11 74.7 51 70.6
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 5.8e-08 63.5 31 80.6
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 5.8e-08 63.5 31 80.6
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 5.8e-08 63.5 31 80.6
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 5.8e-08 63.5 31 80.6
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 1.7e-07 62.0 31 77.4
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 1.4e-06 58.9 54 51.9
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 2.5e-06 58.2 54 50.0


User provided reference genes

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