Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 3.5e-192 674.9 360 100.0
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 7.9e-168 594.0 374 82.9
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 4.8e-165 584.7 372 81.2
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.1e-164 583.6 372 81.2
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 1.5e-134 483.4 315 79.0
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 2.2e-133 479.6 362 70.7
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.8e-132 476.5 345 72.5
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 5.9e-131 471.5 306 79.1
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 1.7e-130 469.9 331 73.7
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 2.9e-130 469.2 344 72.1
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.1e-129 467.2 302 78.8
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 1.1e-129 467.2 306 78.1
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 4.2e-129 465.3 341 71.8
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 9.4e-129 464.2 369 68.6
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 3.6e-128 462.2 307 76.9
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 8.0e-128 461.1 371 66.8
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 3.0e-127 459.1 365 67.1
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 1.2e-126 457.2 341 71.3
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.2e-126 457.2 369 65.6
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 3.4e-126 455.7 304 75.3
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 4.4e-126 455.3 309 76.1
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 7.5e-126 454.5 332 71.4
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 7.5e-126 454.5 305 76.4
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 9.8e-126 454.1 317 73.2
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 1.7e-125 453.4 369 64.8
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 1.7e-125 453.4 307 75.6
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 2.8e-125 452.6 369 64.8
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 3.7e-125 452.2 307 75.2
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 1.1e-124 450.7 307 74.3
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 1.8e-124 449.9 361 66.5
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 3.1e-124 449.1 306 74.5
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 9.1e-124 447.6 363 64.5
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 2.7e-123 446.0 363 64.2
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 2.7e-123 446.0 304 74.7
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 3.5e-123 445.7 304 74.7
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 3.5e-123 445.7 366 64.2
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 5.9e-123 444.9 339 69.6
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 1.3e-122 443.7 364 66.2
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 2.2e-122 443.0 347 69.5
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 2.9e-122 442.6 352 66.5
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 3.8e-122 442.2 358 66.5
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 5.0e-122 441.8 305 72.8
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 6.5e-122 441.4 323 71.2
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 6.5e-122 441.4 317 71.6
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 1.5e-121 440.3 306 73.9
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 2.5e-121 439.5 367 63.8
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 3.2e-121 439.1 301 72.1
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 3.2e-121 439.1 362 65.2
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 5.5e-121 438.3 360 65.8
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 9.4e-121 437.6 344 67.4
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 2.7e-120 436.0 308 72.4
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 2.7e-120 436.0 307 72.0
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 3.6e-120 435.6 308 72.4
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 3.6e-120 435.6 305 74.4
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 4.7e-120 435.3 306 72.2
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 6.1e-120 434.9 308 72.1
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 6.1e-120 434.9 307 72.3
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 6.1e-120 434.9 303 72.6
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 8.0e-120 434.5 308 72.1
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 1.4e-119 433.7 327 69.1
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.8e-119 433.3 306 71.9
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.8e-119 433.3 306 71.9
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 1.8e-119 433.3 306 72.5
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 2.3e-119 433.0 302 70.9
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 5.2e-119 431.8 397 58.9
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 8.8e-119 431.0 304 70.7
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 1.5e-118 430.3 305 71.8
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 2.6e-118 429.5 337 68.8
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 5.7e-118 428.3 306 71.6
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 5.7e-118 428.3 293 74.1
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 1.3e-117 427.2 315 69.2
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 1.3e-117 427.2 304 70.4
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 2.8e-117 426.0 306 72.2
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 4.9e-117 425.2 306 71.6
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 1.4e-116 423.7 306 70.6
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 4.1e-116 422.2 301 72.4
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 6.6e-114 414.8 307 69.4
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 6.6e-114 414.8 341 66.3
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 4.2e-113 412.1 356 62.9
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 5.5e-113 411.8 303 69.0
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 2.8e-112 409.5 307 68.4
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 2.6e-110 402.9 305 67.5
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 3.4e-110 402.5 248 79.0
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 4.4e-110 402.1 305 66.6
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 9.8e-110 401.0 288 69.4
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.7e-109 400.2 296 72.0
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 3.2e-108 396.0 282 69.5
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 9.2e-108 394.4 325 62.8
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 4.3e-105 385.6 326 62.6
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.4e-103 380.6 357 59.4
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.9e-101 372.9 364 57.7
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 4.3e-97 359.0 278 68.3
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 4.3e-97 359.0 292 65.8
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 2.9e-93 346.3 243 71.2
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 3.2e-92 342.8 269 63.6
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 3.2e-92 342.8 307 57.7
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 2.7e-91 339.7 277 62.1
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 3.6e-88 329.3 311 57.2
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 4.4e-86 322.4 302 56.6
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 3.0e-82 309.7 320 50.9
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 2.8e-80 303.1 301 57.1
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 1.1e-79 301.2 305 58.7
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.1e-76 291.2 337 55.5
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 5.4e-68 262.3 295 55.3
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 7.9e-67 258.5 248 58.9
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 6.6e-66 255.4 210 64.8
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 2.5e-65 253.4 284 48.2
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 1.3e-64 251.1 324 43.5
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 9.0e-63 245.0 172 75.0
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 6.4e-61 238.8 171 71.9
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 1.5e-49 201.1 187 61.5
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 5.3e-47 192.6 368 36.4
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 9.0e-47 191.8 195 56.9
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 3.4e-46 189.9 235 50.6
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 2.7e-43 180.3 121 76.0
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 1.8e-42 177.6 348 35.1
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 1.1e-39 168.3 183 50.8
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 7.9e-27 125.6 69 88.4
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 2.2e-16 90.9 63 71.4
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 3.2e-12 77.0 81 48.1
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 3.0e-10 70.5 72 51.4
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.0e-10 70.5 42 90.5
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.4e-09 66.6 39 84.6
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 5.7e-09 66.2 48 62.5
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 9.8e-09 65.5 47 63.8
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 2.2e-08 64.3 97 39.2
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 8.3e-08 62.4 38 86.8
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 5.9e-06 56.2 47 55.3


User provided reference genes

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