Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 0.0e+00 1200.3 612 100.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 3.0e-308 1061.2 616 87.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 5.4e-302 1040.4 614 86.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 6.5e-271 937.2 548 87.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 3.3e-259 898.3 623 73.7
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 3.4e-256 888.3 616 72.9
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 2.5e-254 882.1 615 71.9
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 9.4e-254 880.2 616 72.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 7.9e-253 877.1 615 71.9
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 3.9e-252 874.8 620 70.2
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 9.7e-251 870.2 618 71.8
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.3e-250 869.8 616 72.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.2e-250 869.0 616 71.8
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.4e-249 865.5 617 71.8
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 6.9e-249 864.0 615 71.2
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 3.4e-248 861.7 614 70.7
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.7e-247 859.4 616 70.6
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-247 858.6 617 71.3
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 5.0e-247 857.8 621 71.5
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.9e-246 855.9 615 70.6
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.2e-246 854.7 626 70.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 9.4e-246 853.6 618 69.9
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.2e-245 853.2 614 70.4
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.2e-245 853.2 614 70.4
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.1e-245 852.4 618 70.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 3.6e-245 851.7 614 70.2
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.0e-244 850.1 617 70.5
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.4e-244 849.7 620 70.0
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.8e-244 849.4 620 71.3
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 5.7e-243 844.3 613 69.2
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.7e-242 842.8 617 69.7
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 2.8e-242 842.0 620 69.5
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 9.1e-241 837.0 615 67.5
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 7.7e-240 833.9 616 70.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 5.0e-239 831.2 612 69.9
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 6.5e-239 830.9 616 70.5
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.2e-237 826.6 619 69.5
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.7e-237 824.7 630 68.6
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.3e-236 822.4 615 69.3
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 3.0e-236 822.0 620 67.3
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.7e-234 816.2 617 66.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.8e-234 815.5 616 66.7
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.3e-234 814.3 693 62.3
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 3.1e-233 812.0 617 67.6
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.0e-232 809.3 617 69.0
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.7e-232 808.9 617 66.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 5.0e-231 804.7 619 67.4
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 8.5e-231 803.9 616 65.6
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.5e-230 803.1 620 66.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.5e-230 803.1 615 65.7
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.9e-230 802.7 618 67.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 2.1e-229 799.3 620 66.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 3.6e-229 798.5 619 67.5
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 5.2e-228 794.7 619 64.3
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 8.8e-228 793.9 619 63.7
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 8.8e-228 793.9 616 65.6
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.6e-227 792.3 569 70.7
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.6e-227 792.3 574 70.7
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 3.4e-227 792.0 747 57.2
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.7e-226 788.5 622 65.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 4.8e-226 788.1 615 64.9
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.4e-225 786.6 615 64.6
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 4.1e-225 785.0 614 64.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 5.4e-225 784.6 615 64.4
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 9.1e-225 783.9 621 64.9
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.2e-224 783.5 615 64.4
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.6e-224 783.1 619 63.8
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 1.6e-224 783.1 615 64.1
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.0e-224 782.7 615 64.6
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.7e-224 782.3 615 63.7
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 5.9e-224 781.2 610 65.6
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.5e-223 777.7 616 64.9
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.5e-222 776.5 616 64.8
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 3.2e-222 775.4 622 62.4
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 9.5e-222 773.9 615 65.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 9.5e-222 773.9 599 66.4
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.3e-220 769.2 610 65.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 4.0e-220 768.5 616 64.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 6.8e-220 767.7 577 69.3
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 2.0e-219 766.1 612 65.7
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 2.8e-218 762.3 613 64.1
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.6e-216 756.5 617 64.2
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 8.0e-213 744.2 547 70.2
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 8.9e-212 740.7 599 62.6
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.8e-209 733.0 617 62.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.6e-208 729.9 609 63.2
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 4.9e-194 681.8 613 59.2
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 8.3e-194 681.0 504 71.2
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.0e-183 646.0 632 54.7
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.3e-182 642.5 622 56.3
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 7.1e-177 624.8 614 55.5
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.9e-169 600.1 677 48.6
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 8.7e-167 591.3 688 50.4
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 7.1e-161 571.6 622 51.8
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.7e-149 532.7 500 58.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.4e-145 520.8 386 68.7
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 9.3e-145 518.1 354 73.4
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.3e-143 514.2 507 53.5
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-143 512.3 376 70.2
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 8.5e-130 468.4 365 67.9
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 7.9e-128 461.8 365 67.4
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 7.2e-113 412.1 439 52.2
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-109 401.0 387 58.9
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.6e-107 394.4 257 77.0
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 2.5e-105 387.1 257 76.7
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 6.8e-103 379.0 644 39.1
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 2.4e-100 370.5 323 60.4
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 6.1e-96 355.9 244 71.7
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.5e-94 351.3 256 68.0
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.1e-92 345.1 232 74.1
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 5.6e-81 306.2 645 34.9
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.4e-76 291.6 179 77.7
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 6.9e-63 246.1 225 60.0
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 7.6e-62 242.7 237 58.6
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 5.8e-54 216.5 168 67.3
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 7.9e-51 206.1 159 64.8
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.2e-46 192.2 111 83.8
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-45 186.0 111 82.9
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 6.0e-43 179.9 111 79.3
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 1.3e-42 178.7 110 78.2
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 3.0e-42 177.6 109 77.1
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 4.3e-41 173.7 109 75.2
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-34 152.5 136 60.3
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-33 148.3 100 73.0
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 2.5e-33 147.9 121 60.3
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 2.8e-32 144.4 121 63.6
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-28 132.5 82 76.8
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-26 125.2 121 58.7
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-26 123.2 83 69.9
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.3e-24 119.0 134 51.5
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 2.2e-24 118.2 81 67.9
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 2.2e-24 118.2 81 67.9
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 1.8e-23 115.2 513 25.7
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-23 114.0 69 82.6
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 9.1e-23 112.8 72 73.6
AagrBONN_evm.TU.Sc2ySwM_340.40 Anthoceros agrestis HOM05D005117 ORTHO05D005956 5.5e-20 103.6 83 56.6
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 7.9e-19 99.8 66 69.7
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 8.8e-18 96.3 57 71.9
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.6e-14 84.7 144 39.6
RcHm_v2.0_Chr6g0249791 Rosa chinensis HOM05D005117 ORTHO05D005956 5.9e-14 83.6 55 74.5
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 5.5e-12 77.0 41 82.9
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 3.6e-11 74.3 50 74.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 4.7e-11 73.9 41 85.4
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 8.0e-11 73.2 40 85.0
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 8.8e-10 69.7 169 27.2
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 9.7e-09 66.2 41 70.7
SHI04055 Sapria himalayana HOM05D005117 ORTHO05D005956 8.2e-08 63.2 51 62.7
SEGI_33948 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.1e-07 62.8 45 68.9
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 7.0e-07 60.1 161 26.7
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 7.7e-06 56.6 41 65.9


User provided reference genes

Program Settings