Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 2.4e-54 215.3 112 100.0
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.4e-33 146.4 128 69.5
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 9.7e-32 140.2 127 68.5
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.3e-31 139.8 128 68.0
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.0e-17 93.6 68 70.6
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 2.3e-17 92.4 65 72.3
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 3.0e-17 92.0 68 69.1
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 8.8e-17 90.5 66 66.7
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.5e-16 89.7 99 56.6
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 1.5e-16 89.7 64 71.9
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.5e-16 89.7 116 48.3
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.5e-16 89.7 87 56.3
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 2.6e-16 89.0 66 68.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.6e-16 89.0 66 68.2
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.6e-16 89.0 66 69.7
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 4.4e-16 88.2 65 66.2
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 5.7e-16 87.8 66 66.7
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 7.5e-16 87.4 64 67.2
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.8e-15 84.7 123 43.9
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 4.8e-15 84.7 66 62.1
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 6.3e-15 84.3 121 44.6
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 8.2e-15 84.0 61 70.5
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.1e-14 83.6 130 43.8
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 2.4e-14 82.4 66 63.6
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.4e-14 82.4 129 47.3
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.1e-14 82.0 68 60.3
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 3.1e-14 82.0 68 60.3
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 4.1e-14 81.6 107 48.6
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 4.1e-14 81.6 136 42.6
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 5.3e-14 81.3 64 60.9
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 9.1e-14 80.5 65 60.0
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 9.1e-14 80.5 64 59.4
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.6e-13 79.7 66 60.6
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 2.0e-13 79.3 58 69.0
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.7e-13 79.0 98 44.9
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 3.5e-13 78.6 100 49.0
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 3.5e-13 78.6 61 62.3
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 4.5e-13 78.2 83 53.0
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 4.5e-13 78.2 67 59.7
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 7.7e-13 77.4 65 60.0
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 7.7e-13 77.4 65 60.0
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 7.7e-13 77.4 67 61.2
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.0e-12 77.0 96 47.9
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.0e-12 77.0 66 59.1
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 1.0e-12 77.0 83 50.6
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.7e-12 76.3 55 69.1
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 5.0e-12 74.7 64 60.9
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 6.5e-12 74.3 110 44.5
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 8.5e-12 73.9 61 59.0
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 8.5e-12 73.9 65 55.4
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 8.5e-12 73.9 61 57.4
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 8.5e-12 73.9 98 45.9
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 1.1e-11 73.6 54 68.5
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.5e-11 73.2 64 57.8
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 4.2e-11 71.6 66 57.6
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 4.2e-11 71.6 66 51.5
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 5.5e-11 71.2 66 51.5
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 5.5e-11 71.2 87 44.8
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 5.5e-11 71.2 87 44.8
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 5.5e-11 71.2 87 44.8
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 5.5e-11 71.2 87 44.8
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 5.5e-11 71.2 87 44.8
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 5.5e-11 71.2 66 51.5
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 5.5e-11 71.2 61 57.4
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 7.2e-11 70.9 61 54.1
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 7.2e-11 70.9 61 55.7
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 9.4e-11 70.5 108 43.5
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-10 70.1 87 43.7
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-10 70.1 87 43.7
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.6e-10 69.7 59 54.2
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.6e-10 69.7 115 41.7
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.6e-10 69.7 115 41.7
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 1.6e-10 69.7 61 54.1
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.1e-10 69.3 63 54.0
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 2.1e-10 69.3 118 39.0
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 2.1e-10 69.3 97 42.3
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 2.1e-10 69.3 97 42.3
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 2.1e-10 69.3 97 42.3
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 2.7e-10 68.9 61 55.7
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.7e-10 68.2 64 53.1
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 6.1e-10 67.8 119 37.8
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.0e-09 67.0 111 38.7
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.4e-09 66.6 61 52.5
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 1.8e-09 66.2 87 41.4
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 1.8e-09 66.2 87 41.4
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 1.8e-09 66.2 87 41.4
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 1.8e-09 66.2 107 39.3
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 2.3e-09 65.9 59 52.5
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 2.3e-09 65.9 58 53.4
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 2.3e-09 65.9 106 42.5
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 3.0e-09 65.5 111 38.7
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.0e-09 65.1 107 40.2
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 6.8e-09 64.3 109 40.4
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 6.8e-09 64.3 109 40.4
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 6.8e-09 64.3 123 38.2
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 8.8e-09 63.9 116 38.8
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 8.8e-09 63.9 68 48.5
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-08 63.5 91 38.5
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.0e-08 62.8 105 35.2
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 2.6e-08 62.4 91 37.4
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 3.4e-08 62.0 93 40.9
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 4.4e-08 61.6 121 38.0
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 4.4e-08 61.6 57 47.4
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 5.7e-08 61.2 73 43.8
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 5.7e-08 61.2 73 43.8
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 5.7e-08 61.2 73 43.8
SEGI_27334 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 5.7e-08 61.2 106 38.7
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-07 60.1 53 54.7
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-07 60.1 52 55.8
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-07 60.1 52 55.8
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 1.4e-06 56.6 85 36.5
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 1.8e-06 56.2 95 32.6
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 3.1e-06 55.5 57 43.9
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 4.1e-06 55.1 65 38.5
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 7.0e-06 54.3 106 33.0
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 7.0e-06 54.3 66 42.4
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 9.1e-06 53.9 85 37.6
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 9.1e-06 53.9 77 37.7
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 9.1e-06 53.9 63 46.0


User provided reference genes

Program Settings