Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 9.6e-178 626.7 315 100.0
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 2.1e-161 572.4 308 91.2
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 4.5e-159 564.7 318 88.7
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 9.1e-152 540.4 308 86.7
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 4.5e-151 538.1 307 86.6
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 1.3e-150 536.6 308 85.7
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 2.2e-150 535.8 308 85.7
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 2.2e-150 535.8 307 86.0
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 2.9e-150 535.4 309 86.7
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 3.2e-149 531.9 308 85.1
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 5.5e-149 531.2 307 84.7
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 7.2e-149 530.8 307 85.0
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 7.2e-149 530.8 308 84.1
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 1.6e-148 529.6 306 85.3
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 1.6e-148 529.6 306 85.3
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 2.1e-148 529.3 308 84.4
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 2.7e-148 528.9 308 85.4
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 2.7e-148 528.9 308 84.4
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 2.7e-148 528.9 307 84.0
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.6e-148 528.5 308 84.7
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 7.9e-148 527.3 308 84.1
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 7.9e-148 527.3 307 83.7
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 1.0e-147 526.9 307 83.7
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 6.7e-147 524.2 306 83.7
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 6.7e-147 524.2 307 83.7
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 8.8e-147 523.9 305 84.3
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 8.8e-147 523.9 305 84.6
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 8.8e-147 523.9 307 83.1
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 1.1e-146 523.5 307 83.4
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 1.1e-146 523.5 308 82.8
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 1.5e-146 523.1 306 83.3
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 1.5e-146 523.1 307 84.0
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 2.0e-146 522.7 306 83.3
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 2.0e-146 522.7 317 81.4
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 4.4e-146 521.5 306 83.0
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 5.7e-146 521.2 306 83.3
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 5.7e-146 521.2 305 83.3
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 1.7e-145 519.6 307 83.4
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 2.8e-145 518.8 308 81.5
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.8e-145 518.8 306 82.4
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 2.8e-145 518.8 306 83.0
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 3.7e-145 518.5 306 83.3
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 4.8e-145 518.1 307 83.1
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 8.2e-145 517.3 306 83.0
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 8.2e-145 517.3 306 82.4
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 8.2e-145 517.3 330 79.1
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.4e-144 516.5 299 85.3
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 1.4e-144 516.5 306 83.3
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 1.4e-144 516.5 306 83.3
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 2.4e-144 515.8 307 82.4
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 2.4e-144 515.8 306 83.3
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 4.1e-144 515.0 314 81.2
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 6.9e-144 514.2 306 82.0
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 6.9e-144 514.2 307 81.4
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 1.2e-143 513.5 312 81.4
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 2.0e-143 512.7 306 82.0
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 4.5e-143 511.5 306 83.0
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 7.7e-143 510.8 306 81.0
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 8.5e-142 507.3 306 81.0
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 2.5e-141 505.8 306 81.0
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 1.4e-139 500.0 307 80.5
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 3.0e-139 498.8 299 82.3
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 4.4e-138 495.0 305 79.0
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 9.7e-138 493.8 297 82.8
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 1.3e-137 493.4 307 80.5
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.7e-137 493.0 339 75.8
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 8.2e-137 490.7 366 70.5
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.8e-136 489.6 307 78.8
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 4.1e-136 488.4 307 78.8
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 2.3e-131 472.6 330 73.9
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 2.2e-129 466.1 307 75.9
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 3.7e-129 465.3 343 71.1
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 1.4e-128 463.4 349 68.2
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 2.4e-128 462.6 305 77.0
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 5.3e-128 461.5 321 75.1
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 7.0e-128 461.1 301 76.7
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 1.6e-127 459.9 305 76.4
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 4.2e-125 451.8 314 73.9
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 1.6e-124 449.9 322 70.8
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.1e-124 449.5 307 74.3
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 2.7e-124 449.1 265 83.4
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 2.7e-124 449.1 276 80.8
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 4.7e-124 448.4 497 52.7
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 5.2e-123 444.9 311 74.0
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 6.8e-123 444.5 316 73.4
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 8.3e-121 437.6 309 75.4
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 4.1e-120 435.3 419 58.0
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 1.6e-119 433.3 289 75.4
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 1.7e-118 429.9 308 69.2
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 8.3e-113 411.0 306 66.0
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 1.8e-112 409.8 307 65.5
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 5.4e-112 408.3 229 86.5
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 2.7e-111 406.0 251 78.9
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 1.0e-110 404.1 305 69.5
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 1.0e-110 404.1 264 78.0
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 6.6e-110 401.4 262 77.5
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 1.9e-109 399.8 299 70.9
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 1.2e-108 397.1 227 86.3
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 6.4e-105 384.8 290 64.1
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.6e-100 370.2 254 73.2
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 3.6e-100 369.0 262 68.3
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 2.6e-98 362.8 228 78.5
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 3.4e-98 362.5 243 74.5
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 1.3e-97 360.5 217 81.1
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 9.2e-96 354.4 307 61.9
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 2.0e-90 336.7 207 79.7
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 3.0e-86 322.8 305 58.7
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 6.6e-86 321.6 300 56.7
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 5.8e-74 282.0 183 76.0
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 2.4e-72 276.6 176 76.7
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 5.1e-70 268.9 321 48.0
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 4.0e-67 259.2 195 71.3
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 1.4e-64 250.8 157 81.5
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 4.2e-64 249.2 153 78.4
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 4.6e-63 245.7 157 75.8
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-61 240.4 488 35.0
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 2.4e-56 223.4 142 78.2
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 2.4e-56 223.4 120 89.2
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 5.5e-56 222.2 120 90.0
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 5.5e-48 195.7 113 82.3
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 9.7e-45 184.9 228 48.2
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 7.6e-42 175.3 270 35.6
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 2.2e-41 173.7 99 81.8
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 4.2e-32 142.9 288 32.3
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.5e-26 124.4 66 87.9
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 2.0e-26 124.0 63 93.7
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 5.0e-25 119.4 70 80.0
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 3.2e-24 116.7 221 30.8
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 9.4e-24 115.2 58 96.6
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 8.0e-23 112.1 56 96.4
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 3.0e-22 110.2 56 94.6
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.6e-21 107.1 57 91.2
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 4.5e-18 96.3 50 94.0
SEGI_04261 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 1.1e-11 75.1 60 61.7
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 1.4e-11 74.7 43 81.4
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.0e-10 70.9 33 93.9
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 5.2e-06 56.2 102 32.4


User provided reference genes

Program Settings