Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009827 Sechium edule HOM05D006330 ORTHO05D008013 1.7e-168 595.9 300 100.0
ClCG09G008360 Citrullus lanatus HOM05D006330 ORTHO05D008013 1.4e-149 533.1 299 91.0
CsaV3_7G026730 Cucumis sativus L. HOM05D006330 ORTHO05D008013 1.7e-147 526.2 299 89.3
MELO3C021126.2 Cucumis melo HOM05D006330 ORTHO05D008013 3.2e-146 521.9 299 89.0
Gorai.007G161200 Gossypium raimondii HOM05D006330 ORTHO05D008013 4.3e-119 431.8 273 80.2
PGR044G2230 Punica granatum HOM05D006330 ORTHO05D008013 4.3e-119 431.8 262 83.2
TAR362G0826 Trochodendron aralioides HOM05D006330 ORTHO05D008013 4.3e-119 431.8 266 82.0
Thecc.01G207700 Theobroma cacao HOM05D006330 ORTHO05D008013 2.8e-118 429.1 260 83.1
Manes.12G055500 Manihot esculenta HOM05D006330 ORTHO05D008013 3.7e-118 428.7 266 81.2
Gohir.D11G150300 Gossypium hirsutum HOM05D006330 ORTHO05D008013 4.8e-118 428.3 273 79.5
GSVIVG01001532001 Vitis vinifera HOM05D006330 ORTHO05D008013 6.2e-118 427.9 284 78.5
Gohir.A11G143900 Gossypium hirsutum HOM05D006330 ORTHO05D008013 3.1e-117 425.6 273 79.1
Nn7g37444 Nelumbo nucifera HOM05D006330 ORTHO05D008013 1.2e-116 423.7 260 81.9
Haze_03505 Corylus avellana HOM05D006330 ORTHO05D008013 1.5e-116 423.3 266 80.8
Duzib133G1456 Durio zibethinus HOM05D006330 ORTHO05D008013 2.0e-116 422.9 287 75.6
Cfa010572 Carpinus fangiana HOM05D006330 ORTHO05D008013 4.5e-116 421.8 266 80.5
QL09p047707 Quercus lobata HOM05D006330 ORTHO05D008013 5.8e-116 421.4 266 80.1
CiPaw.13G055600 Carya illinoinensis HOM05D006330 ORTHO05D008013 7.6e-116 421.0 266 79.7
TWI36G1481 Tripterygium wilfordii HOM05D006330 ORTHO05D008013 2.9e-115 419.1 262 80.9
Eucgr.K02361 Eucalyptus grandis HOM05D006330 ORTHO05D008013 8.4e-115 417.5 278 77.3
MBI10_g35385_MAGBIO Magnolia biondii HOM05D006330 ORTHO05D008013 1.1e-114 417.2 261 80.5
HPP92_007591 Vanilla planifolia HOM05D006330 ORTHO05D008013 3.2e-114 415.6 261 78.2
Aqoxy2G02383 Aquilegia oxysepala HOM05D006330 ORTHO05D008013 1.2e-113 413.7 258 81.4
Actinidia23802 Actinidia chinensis HOM05D006330 ORTHO05D008013 2.1e-113 412.9 270 78.1
FAN15G1514 Fragaria x ananassa HOM05D006330 ORTHO05D008013 4.6e-113 411.8 249 82.7
Ciclev10015989m.g Citrus clementina HOM05D006330 ORTHO05D008013 6.0e-113 411.4 257 81.3
Atru.chr6.3528 Acer truncatum HOM05D006330 ORTHO05D008013 7.9e-113 411.0 260 81.2
Cc01_g15880 Coffea canephora HOM05D006330 ORTHO05D008013 7.9e-113 411.0 260 80.0
Potri.014G175500 Populus trichocarpa HOM05D006330 ORTHO05D008013 1.0e-112 410.6 270 78.5
HanXRQChr07g0190561 Helianthus annuus HOM05D006330 ORTHO05D008013 1.3e-112 410.2 296 72.0
Lj2C1112G6 Lonicera japonica HOM05D006330 ORTHO05D008013 1.3e-112 410.2 261 79.3
Lalb_Chr12g0210221 Lupinus albus HOM05D006330 ORTHO05D008013 1.8e-112 409.8 265 78.1
Glyma.03G097100 Glycine max HOM05D006330 ORTHO05D008013 2.3e-112 409.5 260 80.0
Sc05g0001630 Simmondsia chinensis HOM05D006330 ORTHO05D008013 2.3e-112 409.5 261 79.3
RcHm_v2.0_Chr6g0282221 Rosa chinensis HOM05D006330 ORTHO05D008013 3.0e-112 409.1 242 84.7
Actinidia34530 Actinidia chinensis HOM05D006330 ORTHO05D008013 5.1e-112 408.3 271 77.5
EL10Ac5g10587 Beta vulgaris HOM05D006330 ORTHO05D008013 5.1e-112 408.3 242 83.5
FvH4_2g17480 Fragaria vesca HOM05D006330 ORTHO05D008013 1.1e-111 407.1 249 81.5
Prupe.8G187200 Prunus persica HOM05D006330 ORTHO05D008013 1.1e-111 407.1 242 83.5
Rhsim01G0247700 Rhododendron simsii HOM05D006330 ORTHO05D008013 1.1e-111 407.1 248 81.9
THA.LOC104804704 Tarenaya hassleriana HOM05D006330 ORTHO05D008013 1.1e-111 407.1 258 78.3
CDE02G1604 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 1.9e-111 406.4 263 77.2
ATR0743G141 Amborella trichopoda HOM05D006330 ORTHO05D008013 2.5e-111 406.0 257 79.4
Sopen09g015980 Solanum pennellii HOM05D006330 ORTHO05D008013 2.5e-111 406.0 268 76.5
CANSAT01G2136 Cannabis sativa HOM05D006330 ORTHO05D008013 3.3e-111 405.6 243 84.4
PSO675G8704 Papaver somniferum HOM05D006330 ORTHO05D008013 4.3e-111 405.2 261 78.2
Phvul.010G036400 Phaseolus vulgaris HOM05D006330 ORTHO05D008013 5.7e-111 404.8 262 78.6
VMungo0331G1131 Vigna mungo HOM05D006330 ORTHO05D008013 5.7e-111 404.8 259 79.5
FAN24G2605 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.3e-110 403.7 249 81.1
arahy.Tifrunner.gnm1.ann1.3RIK1P Arachis hypogaea HOM05D006330 ORTHO05D008013 2.1e-110 402.9 279 75.6
Glyma.07G124200 Glycine max HOM05D006330 ORTHO05D008013 2.1e-110 402.9 260 78.8
Lsat_1_v5_gn_9_16880 Lactuca sativa HOM05D006330 ORTHO05D008013 2.8e-110 402.5 262 76.3
arahy.Tifrunner.gnm1.ann1.84ZR2Z Arachis hypogaea HOM05D006330 ORTHO05D008013 8.2e-110 401.0 280 74.6
MD10G1148200 Malus domestica HOM05D006330 ORTHO05D008013 1.1e-109 400.6 243 83.1
vmacro14689 Vaccinium macrocarpon HOM05D006330 ORTHO05D008013 1.4e-109 400.2 272 74.6
Os11g0247400 Oryza sativa ssp. japonica HOM05D006330 ORTHO05D008013 1.8e-109 399.8 285 70.9
Psat4g208240 Pisum sativum HOM05D006330 ORTHO05D008013 6.9e-109 397.9 268 75.7
TPR.G17377 Trifolium pratense HOM05D006330 ORTHO05D008013 4.5e-108 395.2 259 77.2
AUR62008069 Chenopodium quinoa HOM05D006330 ORTHO05D008013 5.9e-108 394.8 240 81.7
Medtr8g010130 Medicago truncatula HOM05D006330 ORTHO05D008013 5.9e-108 394.8 259 77.2
ECA247G1307 Erigeron canadensis HOM05D006330 ORTHO05D008013 7.6e-108 394.4 278 71.6
Ca_23158_v3 Cicer arietinum L. HOM05D006330 ORTHO05D008013 2.9e-107 392.5 259 78.4
Hma1.2p1_0161F.1_g071650 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 2.9e-107 392.5 240 82.9
DCAR_004774 Daucus carota HOM05D006330 ORTHO05D008013 5.0e-107 391.7 279 71.7
Zm00001eb168340 Zea mays HOM05D006330 ORTHO05D008013 4.2e-106 388.7 269 71.7
MSTRG.21296 Avicennia marina HOM05D006330 ORTHO05D008013 1.2e-105 387.1 262 73.3
SGA_v2.0_scaffold231G43447 Striga asiatica HOM05D006330 ORTHO05D008013 2.7e-105 386.0 266 72.9
SalBow3G0290 Salvia bowleyana HOM05D006330 ORTHO05D008013 1.8e-104 383.3 301 66.1
Aa31sc18G40 Aethionema arabicum HOM05D006330 ORTHO05D008013 2.3e-104 382.9 241 78.8
C03p54570 Brassica napus HOM05D006330 ORTHO05D008013 3.9e-104 382.1 264 73.5
BolC3t17744H Brassica oleracea HOM05D006330 ORTHO05D008013 3.9e-104 382.1 264 73.5
Thhalv10002617m.g Eutrema salsugineum HOM05D006330 ORTHO05D008013 8.7e-104 380.9 245 78.0
AL3G41590 Arabidopsis lyrata HOM05D006330 ORTHO05D008013 1.9e-103 379.8 251 74.9
BcaB08g34453 Brassica carinata HOM05D006330 ORTHO05D008013 3.3e-103 379.0 292 67.5
A03p44190 Brassica napus HOM05D006330 ORTHO05D008013 3.3e-103 379.0 292 67.5
BraA03t13548Z Brassica rapa HOM05D006330 ORTHO05D008013 3.3e-103 379.0 292 67.5
Carub.0003s2579 Capsella rubella HOM05D006330 ORTHO05D008013 9.7e-103 377.5 245 76.7
AT3G25470 Arabidopsis thaliana HOM05D006330 ORTHO05D008013 2.8e-102 375.9 252 74.2
Sp3g22990 Schrenkiella parvula HOM05D006330 ORTHO05D008013 3.7e-102 375.6 251 75.3
BcaC06g35817 Brassica carinata HOM05D006330 ORTHO05D008013 1.1e-101 374.0 251 74.9
A07p06930 Brassica napus HOM05D006330 ORTHO05D008013 2.4e-101 372.9 251 74.5
BraA07t28484Z Brassica rapa HOM05D006330 ORTHO05D008013 2.4e-101 372.9 251 74.5
CARHR101770 Cardamine hirsuta HOM05D006330 ORTHO05D008013 4.1e-101 372.1 245 76.7
Migut.D00775 Erythranthe guttata HOM05D006330 ORTHO05D008013 4.1e-101 372.1 266 70.7
Hund09482 Selenicereus undatus HOM05D006330 ORTHO05D008013 1.5e-100 370.2 223 83.0
BolC7t41520H Brassica oleracea HOM05D006330 ORTHO05D008013 2.6e-100 369.4 252 74.6
COL.COLO4_34269 Corchorus olitorius HOM05D006330 ORTHO05D008013 3.4e-100 369.0 214 86.4
C07p10530 Brassica napus HOM05D006330 ORTHO05D008013 4.5e-100 368.6 252 74.6
Sabra14G0134300 Salix brachista HOM05D006330 ORTHO05D008013 4.5e-100 368.6 288 69.8
Ciclev10018050m.g Citrus clementina HOM05D006330 ORTHO05D008013 7.2e-98 361.3 229 80.3
Mapoly0006s0124 Marchantia polymorpha HOM05D006330 ORTHO05D008013 1.6e-97 360.1 267 65.2
Pp3c24_1560 Physcomitrium patens HOM05D006330 ORTHO05D008013 5.1e-96 355.1 259 66.8
AUR62028646 Chenopodium quinoa HOM05D006330 ORTHO05D008013 2.8e-94 349.4 214 81.8
BcaC01g03225 Brassica carinata HOM05D006330 ORTHO05D008013 6.9e-93 344.7 264 68.6
CSS0004044 Camellia sinensis var. sinensis HOM05D006330 ORTHO05D008013 1.2e-89 334.0 267 67.8
CBR_g60689 Chara braunii HOM05D006330 ORTHO05D008013 6.1e-89 331.6 241 70.1
Lj3g0006219 Lotus japonicus HOM05D006330 ORTHO05D008013 3.9e-88 328.9 221 76.9
Oeu049580.1 Olea europaea HOM05D006330 ORTHO05D008013 2.0e-87 326.6 230 72.6
Dinv28793 Davidia involucrata HOM05D006330 ORTHO05D008013 3.7e-86 322.4 208 81.2
SMO141G0006 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 5.3e-85 318.5 254 62.6
Peaxi162Scf00841g00112 Petunia axillaris HOM05D006330 ORTHO05D008013 3.5e-84 315.8 276 64.1
BcaB06g26747 Brassica carinata HOM05D006330 ORTHO05D008013 5.0e-83 312.0 299 57.2
SMO186G0001 Selaginella moellendorffii HOM05D006330 ORTHO05D008013 9.4e-82 307.8 245 62.4
Solyc09g047870.4 Solanum lycopersicum HOM05D006330 ORTHO05D008013 1.2e-81 307.4 211 75.8
Nitab4.5_0010469g0010 Nicotiana tabacum HOM05D006330 ORTHO05D008013 2.7e-81 306.2 187 82.4
Nitab4.5_0000038g0340 Nicotiana tabacum HOM05D006330 ORTHO05D008013 4.7e-81 305.4 187 82.4
Cpa.g.sc8.41 Carica papaya HOM05D006330 ORTHO05D008013 1.1e-79 300.8 213 73.7
PSO732G0743 Papaver somniferum HOM05D006330 ORTHO05D008013 7.5e-79 298.1 179 83.2
HanXRQChr07g0198371 Helianthus annuus HOM05D006330 ORTHO05D008013 8.8e-72 274.6 181 77.9
MCO07G099 Micromonas commoda HOM05D006330 ORTHO05D008013 7.5e-71 271.6 240 57.5
FAN27G2337 Fragaria x ananassa HOM05D006330 ORTHO05D008013 1.6e-68 263.8 186 75.3
Cre10.g428900 Chlamydomonas reinhardtii HOM05D006330 ORTHO05D008013 2.1e-65 253.4 244 57.8
PRCOL_00000451 Prasinoderma coloniale HOM05D006330 ORTHO05D008013 2.2e-54 216.9 289 45.3
CAN.G253.5 Capsicum annuum HOM05D006330 ORTHO05D008013 5.9e-52 208.8 130 80.8
SEGI_37995 Sequoiadendron giganteum HOM05D006330 ORTHO05D008013 4.1e-45 186.0 115 76.5
AagrBONN_evm.TU.Sc2ySwM_368.2380 Anthoceros agrestis HOM05D006330 ORTHO05D008013 5.8e-39 165.6 116 67.2
arahy.Tifrunner.gnm1.ann1.VBTZ6V Arachis hypogaea HOM05D006330 ORTHO05D008013 1.3e-35 154.5 112 69.6
Hma1.2p1_0161F.1_g071660 Hydrangea macrophylla HOM05D006330 ORTHO05D008013 1.5e-34 151.0 89 80.9
PSO675G8411 Papaver somniferum HOM05D006330 ORTHO05D008013 4.7e-33 146.0 94 76.6
CDE04G0367 Ceratophyllum demersum HOM05D006330 ORTHO05D008013 3.9e-27 126.3 85 70.6
Cfa009322 Carpinus fangiana HOM05D006614 ORTHO05D008217 1.5e-26 124.4 77 79.2
BcaB06g26875 Brassica carinata HOM05D006330 ORTHO05D008013 1.3e-11 74.7 64 62.5
VMungo1383G2211 Vigna mungo HOM05D006330 ORTHO05D434633 2.1e-09 67.4 44 70.5
RcHm_v2.0_Chr5g0065021 Rosa chinensis HOM05D006330 ORTHO05D008013 8.1e-09 65.5 45 73.3


User provided reference genes

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