Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 0.0e+00 1119.4 552 100.0
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 9.8e-303 1042.7 529 95.8
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.3e-302 1042.3 529 95.7
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 8.3e-302 1039.6 529 95.5
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.1e-301 1039.3 529 95.7
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.9e-277 958.7 533 87.8
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 2.4e-277 958.4 529 88.5
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 3.5e-276 954.5 529 88.1
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.7e-275 952.2 528 88.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.7e-275 952.2 532 86.8
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 6.6e-275 950.3 533 86.7
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 8.7e-275 949.9 527 88.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-274 949.5 527 87.9
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.5e-274 949.1 527 87.9
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 9.6e-274 946.4 532 86.5
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-273 946.0 527 87.7
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.8e-273 944.9 527 87.9
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.2e-273 943.7 528 87.1
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 6.2e-273 943.7 528 86.7
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 6.9e-272 940.3 528 86.6
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 9.0e-272 939.9 528 86.6
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 2.6e-271 938.3 533 85.9
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.4e-271 937.9 530 85.8
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 3.4e-271 937.9 530 85.8
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 1.3e-270 936.0 568 82.2
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.3e-270 936.0 528 86.2
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 2.9e-270 934.9 528 86.2
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 2.9e-270 934.9 528 86.2
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 2.4e-269 931.8 530 85.8
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 4.2e-269 931.0 533 85.7
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 4.2e-269 931.0 528 86.0
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 7.1e-269 930.2 529 85.3
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.0e-268 927.2 528 85.4
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 7.9e-268 926.8 528 85.6
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.0e-267 926.4 516 87.6
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.3e-267 926.0 503 88.5
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 3.9e-267 924.5 529 84.9
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 8.7e-267 923.3 518 86.1
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 7.4e-266 920.2 526 84.6
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 7.4e-266 920.2 528 84.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 9.6e-266 919.8 519 85.9
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.6e-265 919.1 519 85.9
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 3.7e-265 917.9 528 85.2
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.7e-265 917.9 503 88.7
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 4.8e-265 917.5 527 83.7
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 6.2e-265 917.1 529 85.1
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 6.2e-265 917.1 534 83.9
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 8.1e-265 916.8 528 85.0
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 1.4e-264 916.0 504 87.5
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.4e-264 916.0 527 84.6
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.4e-264 915.2 527 84.1
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 9.0e-264 913.3 527 84.1
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.2e-263 912.9 528 83.9
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.0e-263 912.1 527 84.3
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.0e-263 912.1 528 84.5
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.0e-263 912.1 524 83.6
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.6e-263 911.8 529 84.7
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 5.8e-263 910.6 528 82.8
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 4.9e-262 907.5 527 83.3
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-261 906.4 527 83.1
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.1e-261 906.4 527 83.1
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.1e-261 906.4 532 85.0
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 1.4e-261 906.0 509 84.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 3.2e-261 904.8 499 87.0
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 4.2e-261 904.4 501 86.2
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 5.5e-261 904.0 527 83.1
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 5.5e-261 904.0 527 83.1
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.2e-260 902.9 518 84.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-260 902.9 529 83.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.1e-260 902.1 544 81.4
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 2.1e-260 902.1 529 83.7
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 2.1e-260 902.1 526 84.0
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.7e-260 901.7 518 85.3
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 6.0e-260 900.6 512 84.4
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 6.0e-260 900.6 504 85.9
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 3.0e-259 898.3 532 82.0
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 3.0e-259 898.3 501 85.8
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 3.0e-259 898.3 501 85.8
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 3.9e-259 897.9 519 83.8
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.9e-259 897.9 527 83.1
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 5.1e-259 897.5 504 85.9
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 5.1e-259 897.5 562 79.0
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 5.1e-259 897.5 519 84.0
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 6.7e-259 897.1 528 82.0
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.5e-258 896.0 501 85.4
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.5e-258 895.2 504 85.7
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.5e-258 895.2 527 82.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.8e-257 891.7 517 83.2
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 2.8e-257 891.7 537 81.4
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 4.8e-257 891.0 502 84.7
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 8.2e-257 890.2 528 81.1
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 2.4e-256 888.6 531 81.5
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 7.6e-255 883.6 529 80.7
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 9.3e-253 876.7 529 80.7
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 7.9e-252 873.6 504 83.7
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 1.3e-251 872.8 529 80.2
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.8e-251 872.5 500 83.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.5e-250 868.6 521 80.4
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 2.8e-249 865.1 530 79.2
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 3.7e-249 864.8 513 80.5
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.1e-248 861.7 507 82.4
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.1e-248 861.7 507 82.4
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.5e-247 859.4 523 77.4
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 6.1e-244 847.4 524 76.7
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.4e-243 846.3 529 76.0
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.6e-239 832.0 519 78.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.2e-236 823.2 520 77.9
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.7e-236 822.0 529 74.5
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.1e-234 816.6 568 72.4
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 5.9e-231 804.3 522 74.9
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 6.7e-227 790.8 512 74.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.1e-226 790.0 507 73.6
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.6e-226 788.9 500 75.4
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.7e-222 776.2 474 81.9
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 6.1e-220 767.7 526 69.6
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 8.0e-220 767.3 525 70.5
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 7.5e-218 760.8 501 71.5
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.1e-216 755.4 525 68.0
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 9.4e-213 743.8 527 72.5
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 8.0e-212 740.7 503 71.4
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 4.0e-211 738.4 529 71.8
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.3e-206 723.4 413 85.0
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 3.3e-205 718.8 398 88.2
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.2e-201 706.1 527 70.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 4.1e-200 701.8 505 66.3
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 2.3e-190 669.5 380 86.1
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 9.8e-186 654.1 502 63.5
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.9e-184 649.8 515 61.2
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 4.3e-181 638.6 420 78.1
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.4e-176 622.9 347 88.8
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.5e-173 612.8 345 86.7
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 3.1e-155 552.7 519 56.3
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-152 544.3 356 77.5
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 3.0e-150 536.2 492 52.6
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.6e-148 530.4 298 85.9
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 3.2e-144 516.2 296 83.1
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 3.4e-138 496.1 275 88.4
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.2e-136 489.6 357 71.7
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 6.3e-132 475.3 511 48.1
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.1e-128 464.5 503 49.3
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.9e-121 439.9 286 79.0
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 5.2e-94 349.4 201 82.1
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.7e-82 310.5 410 40.0
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 8.1e-63 245.7 329 45.3
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.2e-61 241.9 366 42.6
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.6e-45 186.0 121 71.9
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 3.0e-41 174.1 93 88.2
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 6.5e-28 129.8 95 65.3
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.5e-27 126.7 79 74.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 2.0e-21 108.2 68 72.1
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 4.5e-21 107.1 82 63.4
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 1.3e-12 79.0 72 58.3
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 2.9e-12 77.8 125 41.6
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 3.2e-11 74.3 48 64.6
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 4.4e-08 63.9 35 77.1


User provided reference genes

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