Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0008675 Sechium edule HOM05D000943 ORTHO05D010024 1.5e-110 402.9 210 100.0
Sed0011001 Sechium edule HOM05D000943 ORTHO05D010024 6.9e-47 191.4 277 51.3
ClCG10G007030 Citrullus lanatus HOM05D000943 ORTHO05D010024 6.0e-43 178.3 277 47.3
CsaV3_3G006360 Cucumis sativus L. HOM05D000943 ORTHO05D010024 6.9e-39 164.9 277 45.5
MELO3C016505.2 Cucumis melo HOM05D000943 ORTHO05D010024 3.4e-38 162.5 279 45.9
GSVIVG01023255001 Vitis vinifera HOM05D000943 ORTHO05D010024 1.2e-35 154.1 277 43.3
Peaxi162Scf02228g00005 Petunia axillaris HOM05D000943 ORTHO05D010024 1.6e-35 153.7 277 42.2
SGA_v2.0_scaffold42G15906 Striga asiatica HOM05D000943 ORTHO05D010024 4.6e-35 152.1 276 42.4
Manes.10G118900 Manihot esculenta HOM05D000943 ORTHO05D010024 6.0e-35 151.8 277 43.3
Nn8g40352 Nelumbo nucifera HOM05D000943 ORTHO05D010024 6.0e-35 151.8 277 43.0
Cc02_g23100 Coffea canephora HOM05D000943 ORTHO05D010024 1.0e-34 151.0 276 40.9
Sabra03G0004300 Salix brachista HOM05D000943 ORTHO05D010024 1.0e-34 151.0 277 44.0
Os12g0170300 Oryza sativa ssp. japonica HOM05D000943 ORTHO05D010024 1.8e-34 150.2 265 43.4
Nitab4.5_0002550g0030 Nicotiana tabacum HOM05D000943 ORTHO05D010024 3.0e-34 149.4 274 42.3
Lj5A262G66 Lonicera japonica HOM05D000943 ORTHO05D010024 3.9e-34 149.1 278 41.7
Prupe.1G578600 Prunus persica HOM05D000943 ORTHO05D010024 3.9e-34 149.1 276 42.0
Actinidia01604 Actinidia chinensis HOM05D000943 ORTHO05D010024 8.7e-34 147.9 277 42.2
Rhsim04G0110500 Rhododendron simsii HOM05D000943 ORTHO05D010024 1.1e-33 147.5 277 41.9
TAR628G1147 Trochodendron aralioides HOM05D000943 ORTHO05D010024 1.1e-33 147.5 277 41.5
Ciclev10001198m.g Citrus clementina HOM05D000943 ORTHO05D010024 1.5e-33 147.1 277 42.2
Nitab4.5_0000667g0060 Nicotiana tabacum HOM05D000943 ORTHO05D010024 1.5e-33 147.1 277 42.6
Atru.chr6.800 Acer truncatum HOM05D000943 ORTHO05D010024 2.5e-33 146.4 273 41.8
CAN.G284.3 Capsicum annuum HOM05D000943 ORTHO05D010024 2.5e-33 146.4 277 41.2
Migut.N00828 Erythranthe guttata HOM05D000943 ORTHO05D010024 5.7e-33 145.2 276 40.2
SalBow3G1699 Salvia bowleyana HOM05D000943 ORTHO05D010024 1.3e-32 144.1 275 40.7
CSS0044087 Camellia sinensis var. sinensis HOM05D000943 ORTHO05D010024 1.6e-32 143.7 277 42.2
Cpa.g.sc113.50 Carica papaya HOM05D000943 ORTHO05D010024 1.6e-32 143.7 277 41.9
Potri.003G008700 Populus trichocarpa HOM05D000943 ORTHO05D010024 1.6e-32 143.7 273 44.0
QL02p100337 Quercus lobata HOM05D000943 ORTHO05D010024 1.6e-32 143.7 272 41.9
Manes.07G023600 Manihot esculenta HOM05D000943 ORTHO05D010024 2.8e-32 142.9 277 40.8
Zm00001eb139050 Zea mays HOM05D000943 ORTHO05D010024 4.8e-32 142.1 266 41.4
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 1.8e-31 140.2 277 40.4
vmacro19866 Vaccinium macrocarpon HOM05D000943 ORTHO05D010024 2.4e-31 139.8 277 41.9
CiPaw.05G005300 Carya illinoinensis HOM05D000943 ORTHO05D010024 3.1e-31 139.4 272 41.5
ATR0584G051 Amborella trichopoda HOM05D000943 ORTHO05D010024 5.3e-31 138.7 276 39.9
HanXRQChr01g0027191 Helianthus annuus HOM05D000943 ORTHO05D010024 5.3e-31 138.7 275 41.5
PGR142G1561 Punica granatum HOM05D000943 ORTHO05D010024 3.4e-30 136.0 277 40.1
HPP92_011385 Vanilla planifolia HOM05D000943 ORTHO05D010024 3.4e-30 136.0 274 39.8
Lsat_1_v5_gn_9_120381 Lactuca sativa HOM05D000943 ORTHO05D010024 4.5e-30 135.6 276 40.2
TWI59G1092 Tripterygium wilfordii HOM05D000943 ORTHO05D010024 4.5e-30 135.6 271 41.3
CsaV3_3G006370 Cucumis sativus L. HOM05D000943 ORTHO05D010024 1.7e-29 133.7 277 39.7
ClCG10G007050 Citrullus lanatus HOM05D000943 ORTHO05D010024 2.9e-29 132.9 277 39.0
Duzib132G0520 Durio zibethinus HOM05D000943 ORTHO05D010024 1.4e-28 130.6 275 39.3
Thecc.02G019300 Theobroma cacao HOM05D000943 ORTHO05D010024 1.4e-28 130.6 277 39.4
Nitab4.5_0007295g0040 Nicotiana tabacum HOM05D000943 ORTHO05D010024 1.9e-28 130.2 274 39.1
Nitab4.5_0000787g0260 Nicotiana tabacum HOM05D000943 ORTHO05D010024 4.2e-28 129.0 274 38.7
MELO3C016503.2 Cucumis melo HOM05D000943 ORTHO05D010024 5.5e-28 128.6 278 38.5
Gohir.A04G133500 Gossypium hirsutum HOM05D000943 ORTHO05D010024 5.5e-28 128.6 273 39.9
Gohir.D04G176600 Gossypium hirsutum HOM05D000943 ORTHO05D010024 2.7e-27 126.3 273 39.9
MBI09_g28076_MAGBIO Magnolia biondii HOM05D000943 ORTHO05D010024 2.7e-27 126.3 242 42.1
Gorai.012G169500 Gossypium raimondii HOM05D000943 ORTHO05D010024 1.8e-26 123.6 273 39.2
Peaxi162Scf00011g01123 Petunia axillaris HOM05D000943 ORTHO05D010024 2.3e-26 123.2 272 37.9
unitig_22.g6855 Utricularia gibba HOM05D000943 ORTHO05D010024 3.0e-26 122.9 235 41.3
CSS0023217 Camellia sinensis var. sinensis HOM05D000943 ORTHO05D010024 4.3e-25 119.0 219 41.1
CSS0026808 Camellia sinensis var. sinensis HOM05D000943 ORTHO05D010024 4.3e-25 119.0 219 41.1
Ah.02g128290 Amaranthus hybridus HOM05D000943 ORTHO05D010024 1.6e-24 117.1 275 37.1
EL10Ac4g08445 Beta vulgaris HOM05D000943 ORTHO05D010024 4.8e-24 115.5 274 36.5
CAN.G2125.2 Capsicum annuum HOM05D000943 ORTHO05D010024 1.4e-23 114.0 274 36.5
Haze_10048 Corylus avellana HOM05D000943 ORTHO05D010024 1.8e-23 113.6 234 42.7
Oeu064607.2 Olea europaea HOM05D000943 ORTHO05D010024 2.4e-23 113.2 282 37.2
ECA240G1917 Erigeron canadensis HOM05D000014 ORTHO05D010024 6.9e-23 111.7 248 38.3
Cfa004493 Carpinus fangiana HOM05D000943 ORTHO05D010024 3.4e-22 109.4 270 37.8
Hma1.2p1_2174F.1_g316050 Hydrangea macrophylla HOM05D000943 ORTHO05D010024 4.5e-22 109.0 158 49.4
COL.COLO4_17731 Corchorus olitorius HOM05D000943 ORTHO05D010024 7.7e-22 108.2 220 40.0
ECA234G0636 Erigeron canadensis HOM05D000943 ORTHO05D010024 7.7e-22 108.2 248 37.9
Hund15466 Selenicereus undatus HOM05D000943 ORTHO05D010024 1.9e-20 103.6 248 39.1
AagrBONN_evm.TU.Sc2ySwM_368.1065 Anthoceros agrestis HOM05D004447 ORTHO05D005973 6.1e-19 98.6 265 34.0
Sc07g0005160 Simmondsia chinensis HOM05D000943 ORTHO05D010024 1.4e-18 97.4 264 36.4
Solyc01g103620.4 Solanum lycopersicum HOM05D000943 ORTHO05D010024 1.8e-18 97.1 245 35.5
Sopen01g045990 Solanum pennellii HOM05D000943 ORTHO05D010024 1.8e-18 97.1 245 35.9
SMO230G0059 Selaginella moellendorffii HOM05D000943 ORTHO05D010024 1.5e-17 94.0 246 34.6
DCAR_006674 Daucus carota HOM05D000943 ORTHO05D010024 1.7e-16 90.5 207 37.7
CDE06G0292 Ceratophyllum demersum HOM05D000943 ORTHO05D010024 1.1e-15 87.8 192 34.4
Pp3c7_7830 Physcomitrium patens HOM05D000943 ORTHO05D010024 1.4e-15 87.4 275 32.0
Prupe.5G099300 Prunus persica HOM05D000943 ORTHO05D010024 2.5e-12 76.6 182 35.2
Prupe.6G004300 Prunus persica HOM05D000943 ORTHO05D010024 2.1e-11 73.6 166 34.9
Oeu049813.3 Olea europaea HOM05D000943 ORTHO05D010024 3.3e-09 66.2 118 42.4
Lj1A822T51 Lonicera japonica HOM05D000943 ORTHO05D008314 5.7e-09 65.5 244 29.5
TPR.G35008 Trifolium pratense HOM05D000943 ORTHO05D008314 5.7e-09 65.5 197 35.0
RhsimUnG0206100 Rhododendron simsii HOM05D000943 ORTHO05D008314 9.7e-09 64.7 195 33.8
Ca_03924_v3 Cicer arietinum L. HOM05D000943 ORTHO05D008314 1.7e-08 63.9 207 35.3
ATR0763G119 Amborella trichopoda HOM05D000943 ORTHO05D008314 2.2e-08 63.5 245 31.4
Lj3g0014038 Lotus japonicus HOM05D000943 ORTHO05D008314 2.2e-08 63.5 204 33.3
Aqoxy1G01881 Aquilegia oxysepala HOM05D000943 ORTHO05D008314 2.8e-08 63.2 247 30.8
MBI02_g32395_MAGBIO Magnolia biondii HOM05D000943 ORTHO05D008314 2.8e-08 63.2 244 29.9
TAR629G1459 Trochodendron aralioides HOM05D000943 ORTHO05D008314 2.8e-08 63.2 204 33.8
Sabra11G0082400 Salix brachista HOM05D000943 ORTHO05D008314 3.7e-08 62.8 204 34.3
Thecc.07G135000 Theobroma cacao HOM05D000943 ORTHO05D008314 3.7e-08 62.8 244 31.1
Psat1g007600 Pisum sativum HOM05D000943 ORTHO05D008314 4.8e-08 62.4 207 33.3
Ciclev10020318m.g Citrus clementina HOM05D000943 ORTHO05D008314 6.3e-08 62.0 204 34.3
Sabra11G0077500 Salix brachista HOM05D000943 ORTHO05D008314 6.3e-08 62.0 204 33.8
EL10Ac4g08437 Beta vulgaris HOM05D000943 ORTHO05D008314 1.1e-07 61.2 249 27.3
Potri.011G103200 Populus trichocarpa HOM05D000943 ORTHO05D008314 1.4e-07 60.8 204 33.8
Prupe.4G155400 Prunus persica HOM05D000943 ORTHO05D008314 1.4e-07 60.8 244 30.3
VMungo1080G0956 Vigna mungo HOM05D000943 ORTHO05D008314 1.4e-07 60.8 248 29.0
FAN25G0219 Fragaria x ananassa HOM05D000943 ORTHO05D008314 2.4e-07 60.1 245 29.8
Hund10402 Selenicereus undatus HOM05D000943 ORTHO05D008314 2.4e-07 60.1 214 32.7
vmacro09420 Vaccinium macrocarpon HOM05D000943 ORTHO05D008314 2.4e-07 60.1 205 32.7
CSS0008690 Camellia sinensis var. sinensis HOM05D000943 ORTHO05D010024 3.1e-07 59.7 86 48.8
Eucgr.F03227 Eucalyptus grandis HOM05D000943 ORTHO05D008314 3.1e-07 59.7 204 34.3
MBI02_g32396_MAGBIO Magnolia biondii HOM05D000943 ORTHO05D008314 3.1e-07 59.7 251 30.7
Pp3c18_12460 Physcomitrium patens HOM05D000943 ORTHO05D008314 3.1e-07 59.7 244 27.5
Nitab4.5_0001386g0010 Nicotiana tabacum HOM05D000943 ORTHO05D008314 4.1e-07 59.3 204 30.4
CANSAT56G1032 Cannabis sativa HOM05D000943 ORTHO05D008314 5.3e-07 58.9 245 27.8
Sed0007276 Sechium edule HOM05D000943 ORTHO05D008314 5.3e-07 58.9 207 32.9
unitig_62.g23077 Utricularia gibba HOM05D000943 ORTHO05D008314 5.3e-07 58.9 248 29.0
AUR62033421 Chenopodium quinoa HOM05D000943 ORTHO05D007752 7.0e-07 58.5 233 27.5
Cre12.g532500 Chlamydomonas reinhardtii HOM05D000943 ORTHO05D007752 7.0e-07 58.5 238 28.2
MD03G1251200 Malus domestica HOM05D000943 ORTHO05D008314 7.0e-07 58.5 247 29.1
arahy.Tifrunner.gnm1.ann1.A1RUKD Arachis hypogaea HOM05D000943 ORTHO05D008314 9.1e-07 58.2 242 31.4
arahy.Tifrunner.gnm1.ann1.AVJ0IE Arachis hypogaea HOM05D000943 ORTHO05D008314 9.1e-07 58.2 242 31.4
MELO3C025675.2 Cucumis melo HOM05D000943 ORTHO05D008314 9.1e-07 58.2 204 31.9
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 9.1e-07 58.2 247 26.7
Glyma.12G234600 Glycine max HOM05D000943 ORTHO05D008314 9.1e-07 58.2 200 31.0
MD11G1271200 Malus domestica HOM05D000943 ORTHO05D008314 9.1e-07 58.2 244 29.9
Medtr2g073190 Medicago truncatula HOM05D000943 ORTHO05D008314 9.1e-07 58.2 217 31.3
Peaxi162Scf00000g76016 Petunia axillaris HOM05D000943 ORTHO05D008314 9.1e-07 58.2 204 29.4
COL.COLO4_03605 Corchorus olitorius HOM05D000943 ORTHO05D008314 1.2e-06 57.8 244 27.9
HanXRQChr10g0305601 Helianthus annuus HOM05D000943 ORTHO05D008314 1.2e-06 57.8 250 27.2
Manes.03G078100 Manihot esculenta HOM05D000943 ORTHO05D008314 1.2e-06 57.8 204 34.3
Solyc12g005410.2 Solanum lycopersicum HOM05D000943 ORTHO05D008314 1.2e-06 57.8 204 29.4
CsaV3_4G032780 Cucumis sativus L. HOM05D000943 ORTHO05D008314 1.5e-06 57.4 204 32.4
Os01g0645200 Oryza sativa ssp. japonica HOM05D000943 ORTHO05D007752 1.5e-06 57.4 203 29.1
PGSC0003DMG400019027 Solanum tuberosum HOM05D000943 ORTHO05D008314 1.5e-06 57.4 204 29.9
unitig_22.g5484 Utricularia gibba HOM05D000943 ORTHO05D007752 1.5e-06 57.4 204 30.9
arahy.Tifrunner.gnm1.ann1.BUF90N Arachis hypogaea HOM05D000943 ORTHO05D008314 2.0e-06 57.0 204 31.9
arahy.Tifrunner.gnm1.ann1.WT9QCD Arachis hypogaea HOM05D000943 ORTHO05D008314 2.0e-06 57.0 204 31.9
HPP92_018428 Vanilla planifolia HOM05D000943 ORTHO05D008314 2.0e-06 57.0 205 32.7
Gorai.002G045800 Gossypium raimondii HOM05D000943 ORTHO05D008314 2.6e-06 56.6 247 28.3
Sc16g0007780 Simmondsia chinensis HOM05D000943 ORTHO05D008314 2.6e-06 56.6 245 29.0
Sopen12g001380 Solanum pennellii HOM05D000943 ORTHO05D008314 2.6e-06 56.6 204 29.4
Gorai.012G168600 Gossypium raimondii HOM05D000943 ORTHO05D010024 3.5e-06 56.2 80 46.2
Pp3c5_7360 Physcomitrium patens HOM05D000943 ORTHO05D007752 3.5e-06 56.2 202 28.7
ClCG11G017120 Citrullus lanatus HOM05D000943 ORTHO05D008314 4.5e-06 55.8 204 32.4
FAN11G0107 Fragaria x ananassa HOM05D000943 ORTHO05D008314 4.5e-06 55.8 244 29.5
FAN16G1964 Fragaria x ananassa HOM05D000943 ORTHO05D008314 4.5e-06 55.8 244 29.5
FAN21G2606 Fragaria x ananassa HOM05D000943 ORTHO05D008314 4.5e-06 55.8 244 29.5
Medtr2g073070 Medicago truncatula HOM05D000943 ORTHO05D008314 4.5e-06 55.8 165 36.4
THA.LOC104812302 Tarenaya hassleriana HOM05D000943 ORTHO05D008314 4.5e-06 55.8 247 30.4
TWI38G0474 Tripterygium wilfordii HOM05D000943 ORTHO05D008314 4.5e-06 55.8 204 32.8
ATR0083G040 Amborella trichopoda HOM05D000943 ORTHO05D007752 5.9e-06 55.5 202 27.7
Nitab4.5_0000092g0190 Nicotiana tabacum HOM05D000943 ORTHO05D008314 5.9e-06 55.5 201 29.4
PGR031G3430 Punica granatum HOM05D000943 ORTHO05D008314 5.9e-06 55.5 207 30.0
AUR62019668 Chenopodium quinoa HOM05D000943 ORTHO05D008314 7.7e-06 55.1 245 27.8
DCAR_017587 Daucus carota HOM05D000943 ORTHO05D008314 7.7e-06 55.1 244 29.1
Gohir.D01G037600 Gossypium hirsutum HOM05D000943 ORTHO05D008314 7.7e-06 55.1 247 28.3
MBI01_g45790_MAGBIO Magnolia biondii HOM05D000943 ORTHO05D007752 7.7e-06 55.1 204 29.9


User provided reference genes

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