Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.3e-117 426.4 213 100.0
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.3e-109 399.8 213 93.4
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 2.9e-109 398.7 213 93.0
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 1.7e-106 389.4 213 90.6
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 1.9e-105 386.0 213 88.7
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.5e-91 338.6 216 76.9
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.9e-90 335.1 216 75.9
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 3.9e-90 335.1 216 76.4
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 3.1e-87 325.5 211 72.5
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 4.0e-87 325.1 216 74.5
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 9.0e-87 323.9 211 73.0
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 2.0e-86 322.8 216 73.1
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 3.4e-86 322.0 213 75.1
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 3.4e-86 322.0 217 72.4
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.5e-86 321.6 216 74.5
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 7.6e-86 320.9 216 70.8
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 7.6e-86 320.9 216 70.8
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 7.6e-86 320.9 215 71.6
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.0e-85 320.5 215 72.1
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 6.5e-85 317.8 211 71.1
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 6.5e-85 317.8 211 71.1
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 6.5e-85 317.8 211 70.1
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 6.5e-85 317.8 222 72.1
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 8.4e-85 317.4 216 70.8
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 1.1e-84 317.0 218 68.8
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 1.1e-84 317.0 218 72.5
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.1e-84 317.0 216 72.2
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 1.4e-84 316.6 214 72.0
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.9e-84 316.2 216 70.8
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 3.2e-84 315.5 222 71.2
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 4.2e-84 315.1 216 69.9
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 7.1e-84 314.3 215 69.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 7.1e-84 314.3 216 69.9
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 7.1e-84 314.3 213 69.5
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 2.1e-83 312.8 214 71.0
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 2.1e-83 312.8 211 69.2
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 3.5e-83 312.0 216 69.4
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 3.5e-83 312.0 217 71.0
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 1.3e-82 310.1 216 71.3
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 1.8e-82 309.7 214 71.0
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 2.3e-82 309.3 221 68.3
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 5.1e-82 308.1 220 67.3
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 6.7e-82 307.8 218 69.3
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 1.9e-81 306.2 212 69.8
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.5e-81 305.8 213 70.0
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.5e-81 305.8 214 69.6
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 4.3e-81 305.1 212 68.9
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 9.6e-81 303.9 222 65.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 9.6e-81 303.9 210 67.1
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 1.6e-80 303.1 216 70.4
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 2.8e-80 302.4 216 68.5
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 2.8e-80 302.4 226 67.7
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 4.8e-80 301.6 216 71.8
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 8.2e-80 300.8 220 68.6
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 1.1e-79 300.4 228 66.7
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 1.4e-79 300.1 210 66.7
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 1.4e-79 300.1 223 65.0
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 2.4e-79 299.3 228 67.1
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 4.1e-79 298.5 220 65.5
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 4.1e-79 298.5 213 69.5
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 4.1e-79 298.5 215 67.9
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 4.1e-79 298.5 211 68.2
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 6.9e-79 297.7 223 65.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 9.0e-79 297.4 213 66.7
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 9.0e-79 297.4 218 67.4
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 2.0e-78 296.2 218 65.1
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 2.6e-78 295.8 218 65.1
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 4.5e-78 295.0 221 65.2
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 1.0e-77 293.9 221 64.7
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 1.3e-77 293.5 224 63.8
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 1.3e-77 293.5 224 63.8
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.7e-77 293.1 218 67.0
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 2.2e-77 292.7 210 68.6
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 8.4e-77 290.8 224 63.8
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 1.1e-76 290.4 224 63.4
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 1.1e-76 290.4 214 67.8
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 1.4e-76 290.0 224 63.4
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 1.4e-76 290.0 224 63.4
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 1.4e-76 290.0 216 65.7
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 2.5e-76 289.3 198 70.7
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 3.2e-76 288.9 222 64.9
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 3.2e-76 288.9 209 67.0
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 3.2e-76 288.9 216 69.0
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 3.2e-76 288.9 214 65.9
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 4.2e-76 288.5 199 72.4
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 5.5e-76 288.1 224 62.9
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 5.5e-76 288.1 205 66.3
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 9.3e-76 287.3 208 65.9
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 2.3e-74 282.7 213 67.1
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 6.7e-74 281.2 214 63.1
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 1.5e-73 280.0 206 65.5
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 3.3e-73 278.9 217 69.1
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 2.8e-72 275.8 184 72.8
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 2.8e-72 275.8 202 67.8
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 4.8e-72 275.0 209 64.1
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 6.3e-72 274.6 214 62.1
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 6.3e-72 274.6 172 73.8
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 1.1e-71 273.9 221 60.6
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 2.4e-71 272.7 202 67.8
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 4.1e-71 271.9 215 62.8
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 6.9e-71 271.2 215 62.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 9.0e-71 270.8 215 61.9
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 1.2e-70 270.4 223 61.9
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 5.9e-70 268.1 223 61.4
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 5.9e-70 268.1 214 61.2
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 7.7e-70 267.7 206 64.6
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 2.2e-69 266.2 216 62.0
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 2.2e-69 266.2 191 64.9
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 2.9e-69 265.8 189 66.7
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.8e-69 265.4 188 66.0
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 5.0e-69 265.0 246 56.5
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 7.9e-67 257.7 184 66.3
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 5.1e-66 255.0 178 68.0
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.5e-65 253.4 256 53.9
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.5e-65 253.4 256 53.9
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 9.7e-65 250.8 188 62.8
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 1.7e-64 250.0 214 56.5
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 1.7e-64 250.0 215 57.2
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 1.2e-62 243.8 217 59.4
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 2.6e-62 242.7 172 66.9
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 2.2e-61 239.6 175 65.7
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 2.7e-59 232.6 146 71.9
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.5e-57 226.9 145 72.4
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 3.8e-53 212.2 194 56.2
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.6e-51 206.8 143 68.5
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 5.7e-49 198.4 158 60.8
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 6.3e-48 194.9 213 44.6
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 6.3e-48 194.9 136 71.3
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 1.8e-47 193.4 150 66.7
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 5.3e-47 191.8 142 61.3
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 4.2e-44 182.2 220 42.7
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 1.4e-42 177.2 121 70.2
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 2.3e-42 176.4 163 49.7
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 2.2e-40 169.9 143 53.8
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 2.8e-40 169.5 143 60.1
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.2e-38 164.1 107 70.1
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 5.9e-38 161.8 125 60.8
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 1.3e-37 160.6 143 49.0
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.2e-35 154.1 203 39.9
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 8.0e-35 151.4 161 44.1
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 6.8e-34 148.3 210 38.1
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 1.3e-29 134.0 149 38.9
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.9e-28 130.2 216 41.2
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 3.3e-28 129.4 184 37.5
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 4.0e-26 122.5 77 68.8
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 2.2e-24 116.7 75 68.0
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 2.5e-20 103.2 152 38.2
Oeu060262.1 Olea europaea HOM05D004585 ORTHO05D005640 9.5e-20 101.3 89 62.9
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 6.2e-19 98.6 76 57.9
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 3.2e-15 86.3 50 70.0
MD15G1437100 Malus domestica HOM05D004585 ORTHO05D005640 7.0e-15 85.1 78 60.3
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 7.0e-15 85.1 49 75.5
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 9.2e-15 84.7 49 71.4
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 1.6e-14 84.0 55 67.3
Glyma.09G232800 Glycine max HOM05D004585 ORTHO05D005640 1.0e-13 81.3 84 56.0
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 1.3e-13 80.9 49 71.4
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 3.9e-13 79.3 69 53.6
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 8.9e-10 68.2 42 73.8
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 6.4e-08 62.0 53 56.6
Psat1g082200 Pisum sativum HOM05D004585 ORTHO05D005640 1.2e-06 57.8 47 57.4
AUR62006166 Chenopodium quinoa HOM05D000604 ORTHO05D004856 2.1e-06 57.0 94 34.0
AUR62026050 Chenopodium quinoa HOM05D000604 ORTHO05D004856 2.1e-06 57.0 94 34.0
Rhsim08G0090200 Rhododendron simsii HOM05D000285 ORTHO05D000241 2.7e-06 56.6 96 33.3
BcaC09g47949 Brassica carinata HOM05D000285 ORTHO05D000241 4.6e-06 55.8 85 34.1
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 4.6e-06 55.8 34 70.6
DCAR_009360 Daucus carota HOM05D003145 ORTHO05D003586 6.0e-06 55.5 80 30.0
Actinidia36421 Actinidia chinensis HOM05D000285 ORTHO05D000241 7.8e-06 55.1 90 32.2
Os07g0124600 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D000241 7.8e-06 55.1 62 40.3
Hund19007 Selenicereus undatus HOM05D000142 ORTHO05D000124 7.8e-06 55.1 100 28.0


User provided reference genes

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