Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.1e-62 243.0 117 100.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.8e-57 225.7 117 91.5
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.6e-56 222.6 117 91.5
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.5e-40 167.9 117 67.5
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 1.3e-39 166.4 117 65.8
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.3e-39 165.6 117 65.8
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 5.0e-39 164.5 117 65.8
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 8.6e-39 163.7 115 68.7
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 9.5e-38 160.2 115 67.0
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 5.2e-36 154.5 117 64.1
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.5e-35 152.9 117 62.4
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.5e-35 152.9 118 63.6
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 2.0e-35 152.5 116 61.2
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 4.4e-35 151.4 119 61.3
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.7e-35 151.0 119 61.3
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 5.7e-35 151.0 117 62.4
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 7.5e-35 150.6 117 61.5
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.7e-34 149.4 117 61.5
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 2.2e-34 149.1 118 61.9
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.8e-34 148.7 117 61.5
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 4.9e-34 147.9 115 60.9
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 2.0e-32 142.5 117 60.7
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 4.5e-32 141.4 118 58.5
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.7e-31 139.4 117 56.4
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 2.3e-31 139.0 121 58.7
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.9e-31 138.7 121 58.7
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 6.6e-31 137.5 117 55.6
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.6e-31 137.5 121 57.9
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.6e-31 137.1 121 57.9
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.9e-30 136.0 121 57.0
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.3e-30 134.8 120 56.7
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 5.6e-30 134.4 120 55.8
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 9.5e-30 133.7 125 52.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 8.0e-29 130.6 121 54.5
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 54.2
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 54.2
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 54.2
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 1.4e-28 129.8 120 54.2
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 54.2
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 1.8e-28 129.4 120 54.2
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 2.3e-28 129.0 120 53.3
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.3e-28 129.0 120 55.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.0e-28 128.6 120 55.0
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 3.0e-28 128.6 120 54.2
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.0e-28 128.3 120 54.2
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 5.2e-28 127.9 120 53.3
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 5.2e-28 127.9 120 53.3
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 5.2e-28 127.9 121 54.5
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 6.8e-28 127.5 120 52.5
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 6.8e-28 127.5 120 54.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 53.3
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 1.2e-27 126.7 121 54.5
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 3.4e-27 125.2 120 51.7
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 3.4e-27 125.2 120 51.7
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 4.4e-27 124.8 121 56.2
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 4.4e-27 124.8 119 51.3
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 5.8e-27 124.4 120 52.5
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 5.8e-27 124.4 120 53.3
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 5.8e-27 124.4 120 53.3
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 5.8e-27 124.4 120 53.3
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.7e-26 122.9 114 56.1
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 2.2e-26 122.5 125 51.2
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 2.2e-26 122.5 125 51.2
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 2.9e-26 122.1 120 50.8
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 3.7e-26 121.7 120 51.7
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.4e-25 119.8 120 50.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.4e-25 119.8 120 50.0
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 2.4e-25 119.0 119 51.3
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.1e-25 118.2 120 49.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 7.0e-25 117.5 120 48.3
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 7.0e-25 117.5 122 50.8
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 9.2e-25 117.1 122 48.4
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 9.2e-25 117.1 120 49.2
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 9.2e-25 117.1 120 49.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 9.2e-25 117.1 120 49.2
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 9.2e-25 117.1 125 47.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 2.7e-24 115.5 120 51.7
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 3.5e-24 115.2 118 48.3
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 6.0e-24 114.4 120 48.3
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 6.0e-24 114.4 120 48.3
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 7.8e-24 114.0 124 46.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.3e-23 112.5 113 48.7
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 3.0e-23 112.1 118 47.5
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 5.0e-23 111.3 118 46.6
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.1e-22 110.2 125 46.4
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 1.9e-22 109.4 118 49.2
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 3.3e-22 108.6 113 46.9
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 9.5e-22 107.1 123 43.1
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 9.5e-22 107.1 116 45.7
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.6e-21 106.3 125 44.0
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 1.6e-21 106.3 125 43.2
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 2.1e-21 105.9 116 45.7
ClCG08G014180 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.4e-20 103.2 53 94.3
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 2.3e-20 102.4 118 40.7
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 4.0e-20 101.7 113 45.1
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.2e-19 100.1 110 48.2
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 2.0e-19 99.4 118 43.2
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.2e-18 95.9 103 48.5
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 8.3e-18 94.0 124 41.9
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.1e-17 93.6 107 45.8
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 9.2e-17 90.5 97 48.5
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.6e-16 89.7 67 62.7
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 3.5e-16 88.6 125 38.4
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 3.5e-16 88.6 95 48.4
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 4.6e-16 88.2 124 37.1
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 6.0e-16 87.8 122 40.2
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.0e-15 87.0 74 56.8
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-15 86.7 72 52.8
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 6.6e-15 84.3 74 58.1
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.5e-14 83.2 62 59.7
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.2e-13 80.1 69 58.0
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 2.3e-12 75.9 66 54.5
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 4.0e-12 75.1 53 58.5
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 6.8e-12 74.3 155 29.7
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.8e-12 74.3 53 66.0
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 8.9e-12 73.9 40 82.5
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.8e-11 71.2 65 53.8
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 9.9e-11 70.5 65 53.8
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 1.3e-10 70.1 58 58.6
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.7e-10 69.7 110 38.2
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 3.7e-10 68.6 81 44.4
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 4.9e-10 68.2 87 44.8
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 4.9e-10 68.2 52 55.8
Glyma.11G172400 Glycine max HOM05D005168 ORTHO05D006358 1.1e-09 67.0 67 50.7
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.9e-09 66.2 97 38.1
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 1.9e-09 66.2 111 35.1
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.4e-09 65.9 85 37.6
arahy.Tifrunner.gnm1.ann1.BQ9Q0E Arachis hypogaea HOM05D005168 ORTHO05D006358 2.1e-08 62.8 55 52.7
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 7.3e-06 54.3 118 28.8


User provided reference genes

Program Settings