Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 4.3e-104 381.3 191 100.0
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 2.2e-76 289.3 171 86.5
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 1.1e-72 276.9 171 82.5
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 4.3e-72 275.0 171 82.5
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.4e-59 232.6 174 71.3
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.4e-59 232.6 174 71.3
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 5.5e-59 231.5 174 70.7
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.6e-58 229.9 180 67.8
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 2.1e-58 229.6 175 70.9
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 2.7e-58 229.2 174 71.8
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 2.7e-58 229.2 174 69.5
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 4.6e-58 228.4 175 69.7
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 7.9e-58 227.6 181 67.4
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.3e-57 226.1 175 70.3
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 3.0e-57 225.7 184 66.8
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 8.7e-57 224.2 150 76.0
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 8.7e-57 224.2 180 67.2
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.1e-56 223.8 185 67.6
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 1.1e-56 223.8 159 71.7
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 1.1e-56 223.8 147 80.3
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.5e-56 223.4 180 67.2
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 1.5e-56 223.4 177 67.2
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.9e-56 223.0 180 67.2
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 1.9e-56 223.0 179 68.7
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.9e-56 223.0 178 67.4
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 1.9e-56 223.0 179 67.0
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 1.9e-56 223.0 179 67.0
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 3.3e-56 222.2 152 76.3
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 4.3e-56 221.9 181 65.7
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 4.3e-56 221.9 174 67.8
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 4.3e-56 221.9 150 78.0
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 4.3e-56 221.9 174 66.7
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 5.6e-56 221.5 177 68.4
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 5.6e-56 221.5 181 68.5
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 9.6e-56 220.7 176 70.5
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 9.6e-56 220.7 177 66.7
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 9.6e-56 220.7 182 65.9
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.3e-55 220.3 147 77.6
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 2.1e-55 219.5 181 68.0
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 2.8e-55 219.2 179 68.2
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 3.7e-55 218.8 174 66.7
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 6.2e-55 218.0 162 73.5
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 8.1e-55 217.6 183 66.7
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 8.1e-55 217.6 179 68.7
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.1e-54 217.2 176 67.0
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.1e-54 217.2 180 65.6
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.1e-54 217.2 180 65.6
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 1.1e-54 217.2 126 80.2
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.4e-54 216.9 176 67.0
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.4e-54 216.9 153 74.5
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.8e-54 216.5 172 66.9
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 1.8e-54 216.5 175 65.1
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.4e-54 216.1 182 66.5
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 2.4e-54 216.1 183 68.3
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 2.4e-54 216.1 150 76.0
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 3.1e-54 215.7 174 64.9
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 6.9e-54 214.5 181 64.6
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 9.0e-54 214.2 174 63.8
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 1.2e-53 213.8 150 72.7
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.2e-53 213.8 177 65.5
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.5e-53 213.4 173 65.9
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 1.5e-53 213.4 181 65.2
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.5e-53 213.4 182 64.3
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 2.0e-53 213.0 147 72.8
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 2.0e-53 213.0 172 67.4
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 2.6e-53 212.6 184 66.3
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 3.4e-53 212.2 179 64.8
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 3.4e-53 212.2 129 81.4
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 3.4e-53 212.2 179 64.2
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 4.5e-53 211.8 175 65.7
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 5.8e-53 211.5 182 64.3
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 5.8e-53 211.5 182 64.3
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 7.6e-53 211.1 172 66.3
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 7.6e-53 211.1 172 66.3
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.0e-52 210.7 183 65.6
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 2.2e-52 209.5 175 65.7
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 2.2e-52 209.5 183 65.6
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 2.2e-52 209.5 179 65.9
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.9e-52 209.1 181 64.6
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.9e-52 209.1 181 64.6
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.9e-52 209.1 181 64.6
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 3.8e-52 208.8 172 65.1
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 3.8e-52 208.8 172 65.1
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.8e-52 208.8 174 65.5
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 4.9e-52 208.4 173 64.7
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 4.9e-52 208.4 215 57.7
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 4.9e-52 208.4 184 62.0
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 6.5e-52 208.0 176 64.2
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 8.4e-52 207.6 149 71.8
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 8.4e-52 207.6 180 65.0
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 5.5e-51 204.9 183 63.9
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 7.1e-51 204.5 184 61.4
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 9.3e-51 204.1 174 64.9
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.2e-50 203.8 119 84.9
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 2.7e-50 202.6 177 63.8
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 1.8e-49 199.9 150 70.0
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 2.3e-49 199.5 127 75.6
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 3.9e-49 198.7 183 60.7
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.1e-48 197.2 130 76.2
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 1.5e-48 196.8 151 66.9
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 3.3e-48 195.7 147 70.1
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 7.4e-48 194.5 172 59.3
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.3e-47 193.7 182 61.0
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.1e-47 193.0 169 60.9
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.7e-47 192.2 124 75.8
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 1.1e-46 190.7 180 57.8
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.1e-46 190.7 189 61.9
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.4e-46 190.3 142 69.7
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 3.1e-46 189.1 177 62.1
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 9.0e-46 187.6 181 60.2
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 9.0e-46 187.6 162 61.1
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 9.0e-46 187.6 179 58.7
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.3e-44 183.7 176 56.8
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 2.2e-44 183.0 141 68.8
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 8.5e-44 181.0 147 61.9
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 7.2e-43 177.9 294 41.5
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.1e-42 176.4 287 40.4
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 2.7e-42 176.0 117 70.1
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 4.6e-42 175.3 149 65.8
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 6.7e-41 171.4 149 63.8
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 6.7e-41 171.4 135 62.2
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 6.9e-38 161.4 180 52.2
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.8e-33 146.7 130 60.0
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.8e-33 146.7 214 48.1
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.7e-33 144.8 87 82.8
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 8.8e-33 144.4 87 81.6
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 2.0e-32 143.3 165 51.5
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.6e-32 142.9 87 80.5
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 7.4e-32 141.4 169 51.5
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 9.7e-32 141.0 82 84.1
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 4.8e-31 138.7 82 81.7
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 2.4e-30 136.3 82 82.9
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 1.7e-28 130.2 100 58.0
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 1.9e-27 126.7 87 77.0
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 6.1e-26 121.7 96 56.2
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.0e-25 120.9 139 47.5
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 4.7e-18 95.5 54 87.0
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-13 80.1 54 72.2
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.8e-12 75.9 66 62.1
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.1e-11 74.3 104 48.1
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 1.9e-11 73.6 86 52.3
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.4e-11 71.2 92 50.0
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 1.8e-09 67.0 69 39.1
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 2.0e-08 63.5 67 55.2
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 3.1e-06 56.2 38 68.4


User provided reference genes

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