Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1755.0 851 100.0
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1562.0 857 88.4
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1550.4 855 87.8
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1539.6 855 87.6
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1298.5 854 72.6
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1257.7 852 71.4
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1251.9 855 70.5
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1246.9 852 71.0
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1244.6 852 70.4
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1243.4 854 71.0
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1236.5 850 70.0
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1235.3 850 68.7
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1234.9 853 69.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1233.4 853 69.1
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1227.6 852 68.8
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1222.6 851 70.3
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1222.2 856 68.9
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1216.4 855 67.7
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1215.7 854 69.4
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1210.7 855 68.9
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1207.2 851 68.5
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1206.4 851 68.7
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1205.7 854 68.6
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1204.5 853 68.3
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1204.1 856 68.2
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1201.8 863 67.8
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1201.0 854 68.4
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1191.0 850 67.5
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 854 67.8
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1185.6 887 64.9
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1181.4 855 67.3
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1179.5 875 66.4
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1179.5 887 65.2
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1177.9 858 66.2
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1176.0 860 67.0
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1175.2 853 67.2
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1175.2 852 66.9
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1174.8 852 66.4
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1174.1 852 66.4
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1172.9 853 66.9
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1170.6 851 66.7
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1169.1 853 66.9
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1168.7 853 66.8
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1168.3 852 66.3
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1167.5 853 66.1
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1166.0 971 60.1
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1164.4 853 66.7
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1163.3 809 69.5
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 852 65.4
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1158.7 853 66.1
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 825 67.5
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 851 66.3
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1151.7 812 68.6
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1147.5 854 65.6
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1142.5 853 64.7
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1140.6 853 65.2
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1137.1 855 64.7
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1137.1 858 64.5
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1136.7 852 64.2
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1134.0 853 63.9
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1129.4 877 62.9
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 851 65.2
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1125.5 856 63.4
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1123.6 861 64.2
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1122.8 854 64.4
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1122.5 855 62.9
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1120.9 853 64.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1120.5 855 62.5
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1118.2 858 63.3
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1117.8 853 64.2
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1113.6 857 62.3
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1112.8 887 61.3
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1112.1 858 62.6
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1111.3 858 62.8
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1110.9 891 61.7
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1110.1 858 62.7
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1106.7 859 62.5
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1106.3 856 63.3
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1099.3 860 62.7
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1090.1 854 62.9
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1089.7 852 61.6
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1088.6 866 61.8
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1086.6 872 61.7
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1075.1 851 61.3
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 2.9e-311 1071.6 871 60.5
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 3.2e-308 1061.6 861 61.0
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 1.2e-307 1059.7 751 66.6
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 4.7e-304 1047.7 851 60.5
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 1.8e-303 1045.8 784 63.8
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 2.0e-302 1042.3 858 60.3
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.5e-302 1040.4 774 63.7
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 4.9e-301 1037.7 859 58.8
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 3.2e-300 1035.0 766 67.0
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 4.1e-300 1034.6 777 63.3
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 1.2e-299 1033.1 727 68.0
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.6e-299 1032.7 881 59.1
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 1.6e-299 1032.7 776 63.0
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 1.3e-298 1029.6 838 59.8
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 6.6e-298 1027.3 859 59.8
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 2.5e-297 1025.4 778 62.3
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 6.2e-296 1020.8 776 62.2
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 2.3e-295 1018.8 852 59.5
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 4.0e-295 1018.1 771 63.3
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 2.2e-293 1012.3 771 63.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 3.5e-291 1005.0 718 66.2
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 5.1e-290 1001.1 778 62.0
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 5.1e-290 1001.1 767 61.0
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 6.6e-290 1000.7 812 60.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 1.1e-287 993.4 781 61.7
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 8.4e-285 983.8 772 61.5
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.7e-283 978.8 769 59.4
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.5e-281 973.0 913 53.9
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 4.3e-281 971.5 840 56.0
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 8.1e-280 967.2 732 63.1
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 7.6e-278 960.7 853 56.2
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 5.6e-265 917.9 802 57.2
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 6.9e-263 911.0 866 55.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 6.9e-247 857.8 808 52.1
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 2.2e-245 852.8 650 64.8
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 1.1e-244 850.5 768 55.5
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 9.7e-241 837.4 793 53.8
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 6.9e-239 831.2 604 67.7
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.1e-235 819.7 772 50.9
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 3.2e-228 795.8 786 51.0
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 7.2e-228 794.7 817 48.5
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.7e-213 746.9 626 58.5
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 2.2e-213 746.5 771 50.8
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 3.8e-205 719.2 663 57.5
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 3.6e-203 712.6 471 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.0e-194 684.5 661 50.5
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 8.9e-194 681.4 432 71.5
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.6e-189 665.2 426 70.9
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 5.1e-181 639.0 663 52.2
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 3.7e-176 622.9 535 58.3
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 2.4e-175 620.2 482 63.1
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 3.9e-173 612.8 587 54.5
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 7.3e-172 608.6 426 66.2
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.5e-169 600.9 864 39.5
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 9.3e-159 565.1 580 51.9
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 6.1e-134 482.6 320 68.8
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 5.7e-132 476.1 407 59.0
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 3.4e-129 466.8 775 37.9
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 3.1e-122 443.7 432 54.4
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.1e-116 425.2 273 72.5
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 1.0e-112 412.1 336 60.4
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 1.7e-107 394.8 442 50.9
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 3.5e-105 387.1 412 52.7
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 5.0e-104 383.3 395 54.2
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 8.0e-86 322.8 241 62.7
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 2.0e-84 318.2 524 36.6
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 2.6e-84 317.8 819 31.1
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 2.4e-66 258.1 202 57.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 9.5e-63 246.1 210 56.7
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 2.8e-54 218.0 139 72.7
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 6.0e-49 200.3 167 58.7
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 3.1e-45 188.0 98 82.7
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 2.1e-41 175.3 193 48.7
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 3.5e-41 174.5 99 79.8
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 1.1e-29 136.3 145 46.9
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 9.0e-29 133.3 95 66.3
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.3e-24 119.4 86 66.3
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 3.7e-22 111.3 126 47.6
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.7e-19 102.4 83 59.0
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 2.5e-18 98.6 77 63.6
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 4.6e-17 94.4 93 51.6
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 4.6e-17 94.4 84 58.3
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 3.0e-16 91.7 83 54.2
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.3e-15 88.2 46 84.8
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 2.4e-13 82.0 62 59.7
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.0e-11 76.6 95 46.3
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 1.0e-11 76.6 113 43.4
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.3e-11 76.3 93 47.3
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.1e-10 73.2 44 75.0
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.6e-09 69.3 64 60.9
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 1.6e-09 69.3 32 87.5
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.6e-09 67.8 31 90.3


User provided reference genes

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