Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1625.9 804 100.0
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1399.0 760 89.6
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1392.5 757 88.6
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1271.9 758 79.7
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1270.8 689 89.7
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1265.4 746 80.0
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1262.3 746 80.0
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1260.7 771 77.0
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1256.5 740 79.7
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1254.6 758 77.3
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1250.7 752 78.2
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1247.6 776 76.5
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1246.9 782 76.6
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1246.5 758 77.6
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1246.5 782 76.1
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1246.1 757 78.6
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1245.0 789 75.9
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1240.7 794 74.4
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1239.6 776 76.2
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1231.1 794 75.3
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1230.7 803 73.6
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1230.3 754 78.0
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1223.0 753 76.0
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1221.1 781 75.4
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 759 76.8
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1219.9 751 76.0
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1219.1 796 73.1
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1218.0 800 72.5
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1218.0 777 75.5
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1213.4 751 76.0
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1213.0 745 77.2
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1212.2 812 72.3
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1211.8 751 76.0
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1209.9 774 74.8
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1208.4 760 75.4
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1207.6 760 75.5
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1206.8 792 72.5
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1205.3 748 76.1
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 753 75.8
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1203.7 753 76.2
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1201.0 748 76.1
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1200.7 778 74.7
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1199.1 750 76.0
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1199.1 749 74.8
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1198.0 752 75.4
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1195.6 741 76.0
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1194.1 755 75.1
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1193.7 773 74.3
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1193.3 748 75.1
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1188.7 752 74.1
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1186.4 760 74.2
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1185.2 758 75.6
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1181.0 785 72.4
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1178.3 755 74.7
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1177.5 778 73.7
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1177.2 744 74.5
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 746 74.5
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1174.8 757 74.0
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1173.7 752 73.4
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 741 73.3
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1168.7 752 74.1
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1167.1 790 72.8
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1166.0 753 74.2
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1164.4 798 70.6
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1164.1 753 74.0
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1162.9 801 70.3
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1161.4 752 73.8
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1160.6 800 70.4
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1160.2 801 70.3
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1160.2 752 73.4
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1159.8 744 74.7
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1150.2 801 69.3
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1142.5 801 69.3
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1141.7 691 78.9
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1139.8 777 70.8
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1138.6 751 73.2
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1134.4 768 72.3
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1133.6 830 67.2
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1121.7 763 70.8
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1110.1 702 74.6
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1102.4 746 73.1
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1102.0 750 69.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1095.9 767 69.4
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1091.3 809 65.3
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1087.0 695 74.1
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1082.4 777 68.9
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 0.0e+00 1078.2 663 76.6
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 2.3e-308 1062.0 802 64.6
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 4.5e-304 1047.7 685 72.8
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 7.1e-302 1040.4 741 67.7
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 9.9e-296 1020.0 842 60.9
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 3.9e-292 1008.1 625 77.1
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 2.3e-284 982.2 749 60.7
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 2.8e-282 975.3 759 61.1
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 1.9e-278 962.6 748 61.2
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.4e-268 929.9 608 73.0
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.5e-254 882.5 633 66.2
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 2.2e-250 869.4 620 66.8
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.8e-241 839.7 689 61.0
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-224 783.9 682 55.1
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 6.2e-213 745.0 523 68.8
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 2.2e-165 587.0 880 39.5
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 1.1e-158 564.7 595 53.3
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 6.5e-146 522.3 351 67.0
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 7.2e-121 439.1 292 69.9
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 1.6e-96 358.2 260 65.4
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.9e-89 334.7 289 61.6
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 6.9e-79 299.7 226 65.0
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 7.9e-75 286.2 259 58.3
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 7.4e-57 226.5 148 71.6
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 1.1e-47 196.1 122 73.8
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 3.4e-46 191.0 138 61.6
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 2.8e-40 171.4 126 61.1
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.4e-36 159.1 90 76.7
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 2.7e-27 128.3 157 45.2
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 5.2e-26 124.0 92 64.1
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 9.7e-25 119.8 111 49.5
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 6.8e-18 97.1 62 72.6
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 5.7e-17 94.0 110 50.9
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 4.5e-14 84.3 47 76.6
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 4.5e-14 84.3 56 69.6
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 6.1e-11 73.9 43 72.1
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 1.7e-08 65.9 41 75.6
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 4.9e-08 64.3 74 50.0
Medtr5g010890 Medicago truncatula HOM05D000161 ORTHO05D036718 1.8e-07 62.4 48 62.5


User provided reference genes

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