Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 1.5e-192 676.0 344 100.0
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 8.3e-175 617.1 355 89.9
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 7.8e-173 610.5 353 89.0
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 2.5e-171 605.5 353 89.2
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 3.3e-171 605.1 349 89.4
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 6.4e-159 564.3 344 82.6
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 1.1e-158 563.5 353 80.2
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 1.4e-158 563.1 344 82.6
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.4e-158 563.1 344 83.1
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 4.1e-158 561.6 347 81.8
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 9.2e-158 560.5 344 82.6
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 9.2e-158 560.5 345 82.3
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 2.7e-157 558.9 347 81.3
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 2.7e-157 558.9 345 83.2
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 2.7e-157 558.9 345 81.4
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 4.6e-157 558.1 345 82.3
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 7.8e-157 557.4 345 81.4
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 7.8e-157 557.4 347 81.3
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 7.8e-157 557.4 344 82.0
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.0e-156 557.0 348 81.0
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.0e-156 557.0 343 81.9
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.3e-156 556.6 344 81.7
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.3e-156 556.6 344 81.7
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 2.5e-155 552.4 347 82.4
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.3e-155 552.0 345 80.9
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 7.3e-155 550.8 344 81.1
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 9.6e-155 550.4 345 80.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.2e-154 550.1 344 80.2
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.1e-154 549.3 344 81.1
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.8e-154 548.9 364 78.0
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 3.6e-154 548.5 345 79.1
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 6.2e-154 547.7 348 80.2
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 8.1e-154 547.4 345 80.0
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.4e-153 546.6 351 78.9
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.4e-153 546.6 344 80.5
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 1.8e-153 546.2 344 80.5
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 4.0e-153 545.0 344 80.5
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.2e-152 543.5 345 80.3
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.4e-152 541.6 347 79.0
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 5.8e-152 541.2 345 80.6
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.3e-151 540.0 347 78.4
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.2e-151 539.3 348 78.2
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 2.9e-151 538.9 372 76.3
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 3.8e-151 538.5 344 78.8
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 6.4e-151 537.7 351 78.3
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 8.4e-151 537.3 347 78.4
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 1.1e-150 537.0 350 78.9
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.1e-150 537.0 347 78.1
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 1.1e-150 537.0 348 79.6
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 1.9e-150 536.2 344 79.1
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 1.9e-150 536.2 344 78.8
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 3.2e-150 535.4 344 78.8
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 4.2e-150 535.0 344 78.8
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 5.4e-150 534.6 359 77.7
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 5.4e-150 534.6 345 77.7
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 9.3e-150 533.9 345 78.3
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.2e-149 533.5 344 78.2
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.2e-149 533.5 344 79.1
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 1.6e-149 533.1 344 77.0
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.6e-149 533.1 363 76.6
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 3.5e-149 531.9 363 76.9
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 4.6e-149 531.6 345 78.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 6.0e-149 531.2 344 78.2
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 6.0e-149 531.2 348 76.4
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 7.8e-149 530.8 342 78.9
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 7.8e-149 530.8 348 77.3
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 1.0e-148 530.4 344 77.0
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.7e-148 529.6 347 76.7
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.7e-148 529.6 347 78.4
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.7e-148 529.6 344 77.0
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 2.3e-148 529.3 348 77.9
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 5.1e-148 528.1 351 76.9
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 5.1e-148 528.1 344 77.9
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 6.6e-148 527.7 348 78.2
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 1.1e-147 526.9 351 76.9
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 1.1e-147 526.9 348 75.9
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 1.1e-147 526.9 344 78.8
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.9e-147 526.2 344 77.9
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.5e-147 525.8 342 78.4
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 3.3e-147 525.4 346 77.7
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.3e-147 525.0 344 79.7
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 5.6e-147 524.6 345 78.3
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 5.6e-147 524.6 344 77.9
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 9.6e-147 523.9 348 77.0
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 9.6e-147 523.9 344 77.3
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 9.6e-147 523.9 344 77.3
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 9.6e-147 523.9 344 77.3
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 3.6e-146 521.9 350 76.6
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 3.6e-146 521.9 353 75.9
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 4.8e-146 521.5 354 75.7
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 1.1e-145 520.4 349 76.2
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-145 520.4 344 76.7
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 1.1e-145 520.4 349 76.2
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.1e-145 520.4 344 76.7
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 3.1e-145 518.8 349 76.2
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 6.9e-145 517.7 345 76.2
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 1.2e-144 516.9 355 75.2
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 7.6e-144 514.2 365 73.2
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 7.6e-144 514.2 348 73.3
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 1.3e-143 513.5 337 76.9
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 1.7e-143 513.1 348 73.0
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 4.9e-143 511.5 354 74.6
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 1.1e-142 510.4 344 77.6
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 1.1e-142 510.4 330 77.0
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 2.4e-142 509.2 348 72.7
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 4.2e-142 508.4 345 77.4
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 7.1e-142 507.7 347 74.4
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.0e-140 503.8 344 76.2
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 1.1e-139 500.4 338 74.0
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.6e-138 495.4 346 76.6
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.1e-137 493.8 388 69.3
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 5.1e-132 474.9 349 71.9
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 5.6e-131 471.5 346 69.1
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 2.4e-129 466.1 348 70.7
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 2.4e-129 466.1 348 70.7
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 5.3e-129 464.9 344 70.9
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 9.0e-129 464.2 346 68.5
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.7e-127 459.9 346 69.1
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 5.5e-126 454.9 349 67.6
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 7.1e-126 454.5 348 66.7
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.3e-126 454.1 347 72.3
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 3.5e-125 452.2 348 66.7
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 7.9e-125 451.1 344 66.9
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.3e-124 450.3 343 68.8
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.3e-124 449.5 300 74.3
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 3.9e-124 448.7 323 67.2
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 8.7e-124 447.6 315 70.5
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 5.7e-123 444.9 293 77.8
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 5.7e-123 444.9 293 77.8
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 3.1e-121 439.1 344 66.9
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.0e-119 434.1 344 66.9
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.3e-119 433.7 342 66.1
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 2.9e-119 432.6 315 67.6
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 1.1e-113 414.1 274 75.9
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.0e-111 405.2 318 63.2
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 2.5e-110 402.9 231 85.3
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 6.1e-109 398.3 322 62.1
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 7.9e-109 397.9 336 58.6
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.0e-99 366.7 228 78.1
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 8.2e-98 361.3 256 72.3
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 4.2e-94 349.0 199 84.9
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.4e-83 312.4 298 55.4
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 2.1e-77 293.5 246 62.6
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 3.4e-75 286.2 215 67.9
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 7.3e-70 268.5 185 74.6
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.9e-66 255.8 182 67.0
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 4.9e-66 255.8 182 67.0
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 5.2e-60 235.7 165 68.5
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.2e-56 224.6 131 84.0
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 6.6e-55 218.8 119 88.2
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 7.3e-54 215.3 123 84.6
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.3e-50 204.5 122 76.2
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 2.1e-45 187.2 164 61.6
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 1.4e-44 184.5 164 61.0
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 1.7e-42 177.6 164 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.2e-37 161.4 143 60.1
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 3.3e-30 136.7 118 64.4
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 2.0e-27 127.5 92 75.0
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 3.2e-25 120.2 164 42.7
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.2e-24 118.2 70 81.4
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.2e-24 118.2 90 68.9
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 1.5e-19 101.3 78 62.8
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 4.5e-19 99.8 69 69.6
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.6e-16 91.3 109 45.0
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 4.3e-14 83.2 78 55.1
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.3e-13 81.6 146 39.7
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 2.5e-09 67.4 51 66.7
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 7.1e-09 65.9 42 83.3
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 3.9e-07 60.1 36 69.4


User provided reference genes

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